Input parameters:

  Query = F47D12.9a (Len=545)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F47D12.9a, Len=545):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRYRFRKARSNWPMGQNDSRWEPPPVRLNELVTATEPEEIPLPKLEDQPYEGGPLNMTGFMYHPRTKKYYKMTQDPTMP 80  
WD40-rpts                                                                                      

Query       81 QGFSKSDLDRMEKAREAKFQANRPRFTSGSFIQRPVFKPITTLMDDLTLGRCTMARVERHIHESRLLNCNPKPSFTIKTP 160 
WD40-rpts                                                                         (____________

Query      161 IEHYDVSGCEFLDVSETGDRIVGTFTVNPNGVAAKHSAVYVFEVDSIGDTIQSESSRREAYQLLPIRSRSNNAGFNTLGL 240 
WD40-rpts      _____WD 1________________) (________________WD 2________________)               

Query      241 TVRPMLRDDGFSDEPSYLDYAVTRYNSFIVDQTLARVDADVTCMLTVTANDTITRNGNVCSYCTVHLEPLAELSDPEAMP 320 
WD40-rpts                                    (_________________WD 3________________)(__________

Query      321 TLNSPIYNKSWREKGNIWSVGWNAPQMSIGFGLESCFRVENLLTDRSFLMSSRKRNVLNHCFSADGNLVYMGLRNDNVIK 400 
WD40-rpts      _____________WD 4_______________________)  (_________________WD 5_______________

Query      401 SDLRMNRDHITGQLNGACNTTFVRVLEKTRPECVVTEGFDSIIRIWDFRWPKNPMMEMHGHSNNCNRLNVFFDKEERFVF 480 
WD40-rpts      _)(____________________WD 6___________________)    (__________________WD 7______

Query      481 AAGSDGYVRGWSLTSGDMLCSVKTPNHSNPIFPRAVYSDCWGGRPGNSAIIMAVGDSMRVHSLEL 545 
WD40-rpts      ___________)                                                     

7 WD40-repeats found in QUERY=F47D12.9a (Len=545):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   148-186      4.56  302.82  0.00516       10.0%      6.86
  WD 2:  Seg  5   188-225      3.72  268.30  0.01499        7.5%     14.25
  WD 3:  Seg  6   271-309      6.06  364.83  0.00075       10.0%     26.86
  WD 4:  Seg 10   310-361      4.11  284.56  0.00907       12.5%     45.98
  WD 5:  Seg 13   364-402      6.66  389.67  0.00035       20.0%     56.35
  WD 6:  Seg 17   403-447      6.16  369.20  0.00066       17.5%     56.29
  WD 7:  Seg 21   452-492      7.23  413.49  0.00017       17.5%     52.34

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  148-186    -N---C-------------NPKPSFTIKTPIE--HYDVSGCEF--LDVSETGDRIVGTFT
   WD 2  188-225    NP---N---------------GVAAKHSAVYV--FEVDSIGDT--IQSESSRREAYQLLP
   WD 3  271-309    -D---Q-------------TLARVDADVTCML--TVTANDTIT--RNGNVCSYCTVHLEP
   WD 4  310-361    LA---ELSDPEAMPTLNSPIYNKSWREKGNIW--SVGWNAPQM--SIGFGL-ESCFRVEN
   WD 5  364-402    -T---D-------------RSFLMSSRKRNVL--NHCFSADGN--LVYMGLRNDNVIKSD
   WD 6  403-447    LRMNRD-------------HITGQLNGACNTT--FVRVLEKTRPECVVTEGFDSIIRIWD
   WD 7  452-492    -K---N-------------PMMEMHGHSNNCNRLNVFFDKEER--FVFAAGSDGYVRGWS

   WD40 Template    TG---E-------------CLRTLSGHTSGVT--SVSFSPDGK--RLVSGSEDGTIKVWD