Input parameters:

  Query = F47D12.9b (Len=412)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F47D12.9b, Len=412):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARVERHIHESRLLNCNPKPSFTIKTPIEHYDVSGCEFLDVSETGDRIVGTFTVNPNGVAAKHSAVYVFEVDSIGDTIQS 80  
WD40-rpts                    (_________________WD 1________________) (________________WD 2_____

Query       81 ESSRREAYQLLPIRSRSNNAGFNTLGLTVRPMLRDDGFSDEPSYLDYAVTRYNSFIVDQTLARVDADVTCMLTVTANDTI 160 
WD40-rpts      ___________)                                             (_________________WD 3_

Query      161 TRNGNVCSYCTVHLEPLAELSDPEAMPTLNSPIYNKSWREKGNIWSVGWNAPQMSIGFGLESCFRVENLLTDRSFLMSSR 240 
WD40-rpts      _______________)(_______________________WD 4_______________________)  (_________

Query      241 KRNVLNHCFSADGNLVYMGLRNDNVIKSDLRMNRDHITGQLNGACNTTFVRVLEKTRPECVVTEGFDSIIRIWDFRWPKN 320 
WD40-rpts      ________WD 5________________)(____________________WD 6___________________)    (_

Query      321 PMMEMHGHSNNCNRLNVFFDKEERFVFAAGSDGYVRGWSLTSGDMLCSVKTPNHSNPIFPRAVYSDCWGGRPGNSAIIMA 400 
WD40-rpts      _________________WD 7_________________)                                         

Query      401 VGDSMRVHSLEL 412 
WD40-rpts                  

7 WD40-repeats found in QUERY=F47D12.9b (Len=412):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53       6.48  382.20  0.00044       10.0%     17.74
  WD 2:  Seg  5    55-92       5.29  333.31  0.00200        7.5%     17.51
  WD 3:  Seg  7   138-176      6.84  397.35  0.00027       10.0%     30.42
  WD 4:  Seg 11   177-228      4.59  304.31  0.00492       12.5%     49.68
  WD 5:  Seg 15   231-269      6.78  394.60  0.00030       20.0%     56.93
  WD 6:  Seg 19   270-314      6.23  372.08  0.00060       17.5%     57.86
  WD 7:  Seg 23   319-359      7.34  418.06  0.00014       17.5%     53.24

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     -N---C-------------NPKPSFTIKTPIE--HYDVSGCEF--LDVSETGDRIVGTFT
   WD 2   55-92     NP---N---------------GVAAKHSAVYV--FEVDSIGDT--IQSESSRREAYQLLP
   WD 3  138-176    -D---Q-------------TLARVDADVTCML--TVTANDTIT--RNGNVCSYCTVHLEP
   WD 4  177-228    LA---ELSDPEAMPTLNSPIYNKSWREKGNIW--SVGWNAPQM--SIGFGL-ESCFRVEN
   WD 5  231-269    -T---D-------------RSFLMSSRKRNVL--NHCFSADGN--LVYMGLRNDNVIKSD
   WD 6  270-314    LRMNRD-------------HITGQLNGACNTT--FVRVLEKTRPECVVTEGFDSIIRIWD
   WD 7  319-359    -K---N-------------PMMEMHGHSNNCNRLNVFFDKEER--FVFAAGSDGYVRGWS

   WD40 Template    TG---E-------------CLRTLSGHTSGVT--SVSFSPDGK--RLVSGSEDGTIKVWD