Input parameters:

  Query = F49D11.1 (Len=567)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F49D11.1, Len=567):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDALQAYGGSDSEHSDDDASMDQVAKGKSSTLLERAIVTAPDVESKSAIRQVAIVDPKTKEIKSNPKFDQLFKPESGPVN 80  
WD40-rpts                                                                                      

Query       81 HFKSEQQRSQKNTLTGFVEPAHLNEFHFNRQIRSFDTLGYAQNPTAESGTTHFVGDVKKAEAEKGVSLFESKKTGGEKRK 160 
WD40-rpts                                                                                      

Query      161 RVRNDDSADIDGYTGPWSRFIDEKTVAKPTPELQKQMDEIVKKRQEKSRRFKKEKEDSEQMAEESSTLHLKEAEDYQGRS 240 
WD40-rpts                                                                                      

Query      241 FLVPPSFTGVNLREDYVPERCFVPKKLVHTYRGHNKGVNFLQWFPKSAHLFLSCSMDTKIKLWEVYDRQRVVRTYAGHKL 320 
WD40-rpts                                  (_______________WD 1_______________)    (___________

Query      321 PVREVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRFHTGHVPYCLKYHPDDDKNHMFLVGMQNKKIIQWDSRSGEIVQE 400 
WD40-rpts      ______WD 2________________)(___________________WD 3___________________)   (_____

Query      401 YDRHLQAVNSITFFDKNRRFASTSDDKSVRIWEWEIPVDTKLIQNVGLHAIPTMTKSPNDKWVVGQCMDNRIVLFQLVDD 480 
WD40-rpts      ____________WD 4________________)(___________________WD 5__________________)    

Query      481 KLRFSKKKAFRGHNAAGYACNIDFSPDQSFLISGDADGKLFIWDWRTHKIVGKWKAHDSTCIAALWHPHEKSRMITAGWD 560 
WD40-rpts         (__________________WD 6_________________)   (_________________WD 7___________

Query      561 GLIKMWN 567 
WD40-rpts      ______)

7 WD40-repeats found in QUERY=F49D11.1 (Len=567):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   269-304      7.12  408.78  0.00019       30.0%     47.86
  WD 2:  Seg  9   309-347      9.50  506.95  9.1e-06       35.0%     53.28
  WD 3:  Seg 13   348-391      4.66  306.96  0.00454       22.5%     51.74
  WD 4:  Seg 17   395-433      9.36  501.39  1.1e-05       27.5%     56.53
  WD 5:  Seg 21   434-476      6.15  368.71  0.00067       15.0%     52.47
  WD 6:  Seg 25   484-524      7.56  427.05  0.00011       32.5%     47.84
  WD 7:  Seg 29   528-567      7.29  415.72  0.00016       22.5%     51.69

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  269-304    --------HTYRGHNK-G--VNFLQWFP-K--SAHLFLSCSMDTKIKLWE
   WD 2  309-347    -Q---RVVRTYAGHKL-P--VREVAFNN-E---GTEFLSASFDRYVKLWD
   WD 3  348-391    TE---TGQVKQRFHTGHV--PYCLKYHP-DDDKNHMFLVGMQNKKIIQWD
   WD 4  395-433    -G---EIVQEYDRHLQ-A--VNSITFFD-K---NRRFASTSDDKSVRIWE
   WD 5  434-476    WEIPVDTKLIQNVGLH-A--IPTMTKSP-N---DKWVVGQCMDNRIVLFQ
   WD 6  484-524    -F---SKKKAFRGHNA-AGYACNIDFSP-D---QSFLISGDADGKLFIWD
   WD 7  528-567    -H---KIVGKWKAHDS-T--CIAALWHPHE---KSRMITAGWDGLIKMWN

   WD40 Template    TG---ECLRTLSGHTS-G--VTSVSFSP-D---GKRLVSGSEDGTIKVWD