Input parameters:

  Query = F52A8.2 (Len=356)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F52A8.2, Len=356):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPENSQPTTTEKGSEYLEQLANEAEELRKKLDQERHKLNDIPIQQAAERLDVMGALGVKQRRILKGHVGKVLCMDWSLDK 80  
WD40-rpts                                                               (_________________WD 1_

Query       81 RHIVSSSQDGKVIVWDGFTTNKEHALTMPTTWVMACAFSPSSQMIACGGLDNKCSVVPLSFEDDIIQKKRQVATHTSYMS 160 
WD40-rpts      _______________)   (_________________WD 2________________)       (______________

Query      161 CCTFLRSDNLILTGSGDSTCAIWDVESGQLIQNFHGHTGDVFAIDVPKCDTGNTFISAGADKHSLVWDIRSGQCVQSFEG 240 
WD40-rpts      ___WD 3________________)   (__________________WD 4_________________)   (________

Query      241 HEADINTVRFHPNGDAFATGSDDATCRLFDLRADRQVCVYEKESILFPVNGVDFSLSGRILFAGYGDYRVGVWDSLKCAR 320 
WD40-rpts      _________WD 5________________)   (__________________WD 6_________________)   (__

Query      321 HSVLYGHENRISCLRTSPDGTAVCSASWDCTIRIWA 356 
WD40-rpts      _______________WD 7________________)

7 WD40-repeats found in QUERY=F52A8.2 (Len=356):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    58-96       9.70  515.50  7.0e-06       37.5%     55.23
  WD 2:  Seg  6   100-138      8.65  472.11  2.7e-05       22.5%     54.94
  WD 3:  Seg 10   146-184      9.21  495.31  1.3e-05       27.5%     52.85
  WD 4:  Seg 14   188-228      8.35  459.53  4.0e-05       27.5%     55.03
  WD 5:  Seg 18   232-270     10.43  545.31  2.8e-06       32.5%     53.47
  WD 6:  Seg 22   274-314      7.64  430.23  9.9e-05       27.5%     58.00
  WD 7:  Seg 26   318-356      9.29  498.52  1.2e-05       32.5%     50.04

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   58-96     VKQRRILKGHV--GKVLCMDW--SLDKRHIVSSSQDGKVIVWD
   WD 2  100-138    TNKEHALTMPT--TWVMACAF--SPSSQMIACGGLDNKCSVVP
   WD 3  146-184    IQKKRQVATHT--SYMSCCTF--LRSDNLILTGSGDSTCAIWD
   WD 4  188-228    GQLIQNFHGHT--GDVFAIDVPKCDTGNTFISAGADKHSLVWD
   WD 5  232-270    GQCVQSFEGHE--ADINTVRF--HPNGDAFATGSDDATCRLFD
   WD 6  274-314    DRQVCVYEKESILFPVNGVDF--SLSGRILFAGYGDYRVGVWD
   WD 7  318-356    CARHSVLYGHE--NRISCLRT--SPDGTAVCSASWDCTIRIWA

   WD40 Template    GECLRTLSGHT--SGVTSVSF--SPDGKRLVSGSEDGTIKVWD