WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: F54E4.1 [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = F54E4.1 (Len=3011) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (F54E4.1, Len=3011): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNAHQVITGALNNGENVYALGNIEGLTFTACAVGSDVVILDSDFNRVQIIPESKNHLLVSSLSCCQETGKIAVTYGNLVK 80
WD40-rpts
Query 81 ILEATNSGADKSTLKSSIFQFTWVETYSFTHKEPISSVQWSMEGLRLLFVIGNKLVLHQHRSVSSTSRSSTSTPVTFCIS 160
WD40-rpts
Query 161 DDDLQERHTWEIIWTTSLPYKPKYIRYSPDGYYLALSGDRDCFIKIFYQNGTEHTEPEFIAITLNHPAPVCGFEWRKTGR 240
WD40-rpts (_____________WD 1_____________)
Query 241 YMPRKCISPILMSWCEDRTSRIWKETPAPETSIIDLTGEGGGDPLWDRQKQKKFLGKYIRVKKTKTKILNKLRKMMPEKH 320
WD40-rpts
Query 321 QETDSNPIGIRAQIGKSPSLLDIPTSKDNTDHQETSFYLAATINAETDCLLVPSFNDHNNQKPFSVHWLNNKELVFSVGA 400
WD40-rpts
Query 401 EKLLAEAVLLDLDAVTHSNDEPEDSSPTESEKKRDFEHENVRSEHSDATRTGGSVSSDAPSSKDILDVKLEILLRQWTKS 480
WD40-rpts
Query 481 NDVLFSIHPVDGSLLTWTVEWLDDHFRQPVISYSSRLPGALPSSDSMSLHSKLNTFNPHEPIYLDALRNDMENKDTSVLF 560
WD40-rpts
Query 561 HDKLLERRVSNTIHVLTSHDNGTLNLWHMSVDDQSSFSHVVSMTHISRMCGHRFQMQQIIAHPVLPLLLTTSKFKSTKLK 640
WD40-rpts
Query 641 VDSTMDVLSEVILWKITPVGPLCKNGGVKELARVASPSINGFSTVGWVPAILPSCTLGTVCNSPSSCFISCDGNQMIIYQ 720
WD40-rpts
Query 721 AVLDARGLLSELSNAQTAFNSRTPVDNYSDKILRTPSPRSDRAPSFLKQFNVVSTQSTAKPGCVLEVGKIEDVNLNDLNL 800
WD40-rpts
Query 801 MFLHVFQSRIVMADDDDSSESNPMSSVIDRSRSPTFRDKFFIVIVDQKENEDVIMMFSLTISSQPPQSIPTFDTEALPGE 880
WD40-rpts
Query 881 KGFLRPSSPLAPSMAKLNFEAELSADKMPLPEGTRITNMAPAAGHLSSSSLYPACETPYVLVSSDNDDSVRFWRCAKATD 960
WD40-rpts (_______________WD 2_______________)
Query 961 PVSPNKFEWREWNMISDNHPSELGVEGSIVKVNAAHSGRIACAYQKPNTTTDNNIIIEVAVFECESSGGVEWFREDSFRI 1040
WD40-rpts
Query 1041 QQNHFFEFSKPHFTGSQSKRHSGDQEHLHLLQQRTEVLRSSFRRGINAGKPTKPSYELIRAMENASSSVTDIAQMKLENM 1120
WD40-rpts
Query 1121 VRLDWVSTEDGTHMLTVGMGTKVYIYAQIGQDPAQQNVTLMRESETSMRRPSIRKASSLLPNIQPDSRFTSWVCCRVLNL 1200
WD40-rpts
Query 1201 DTADGLPPIPTALSWVRDGILIVGMQSEMRVYNQWNFKTVQEKTKSSNPAANPNIVSLTVSTSHSMLDQLTRKKEALVSS 1280
WD40-rpts
Query 1281 RSRVFLEFVSTMNKAHPKENESQMVLNILKSEGVFETARMCSPILPQYHPKQLIVLLNAGKKRRVKAILNHVLSSLKQKK 1360
WD40-rpts
Query 1361 GAAHNPLSRAASIKRMSTVDREDSTNATPADARIDDDSMDYDEIDDIPLLPLYALMKVDFDSDVVVEKSEELMAKNTDEY 1440
WD40-rpts
Query 1441 DDLFDDGLDKDGDIDAILRDNESMYSGRSRHMSGGSDMGRNENQVSAIFTAKDYRKLTELLTHTHLPGLSSVDQMHLLAI 1520
WD40-rpts
Query 1521 ADTLSHFASDAKDKVEQANAAMKPVVQSVLGDNTAGGYATAAAGVETVDECGLRYLMAMKQHEYLMVCLPMKQRMELKKS 1600
WD40-rpts
Query 1601 GLSASNIIWAQHSETETELLNAVPGMHRTNPSWEELKGLGVAWWLKNTASLKICIEKIAKAAFQQNQDPMDASLFYLALR 1680
WD40-rpts
Query 1681 KKNVLTHLFKTIRNTTMADFFMNDFTKEHWQKVAAKNAFVLMSKQRFQHAAAFFLLSGSLKDAVQTLCSKCNDVQLALVV 1760
WD40-rpts
Query 1761 VRMYESDPEAQQAMINEVLCREVLGITYEEFETQRGCCDDDAPVSAHASKEPFERSMAFWILKDYTRAAHTLVQEAQSDR 1840
WD40-rpts
Query 1841 LLSSLSDIFNFYSYLRKHPLVVRQRLNNVGAQVGTTEKLLALGRQLESILTPPERRLFFRTSAEHMARGCPMLSLDVLNT 1920
WD40-rpts
Query 1921 LPKRISIVQDYDEALKLLFGDNQNQAAPPPPPQMSIDVDWSKPTTSDEPDELKLDWSDEEKDDEEIEEVTNENTVDAPVI 2000
WD40-rpts
Query 2001 QNGAGIENAATLQSQLVGATDIFAQHMKFVASLRILTEELSTLASGFDVDGGQLRNQLLNWLEREVEVLQTTCDYNVERK 2080
WD40-rpts
Query 2081 SDEANEDNHDSDYWSSTGPNYDQPSDLSKLSRASPSLTPKRITWLKANQKLLRSFTSFCTLHSAHNHRLASVLMELLLLL 2160
WD40-rpts
Query 2161 LNVQRDGDDDIVSKQLMATGVNTFPLLDAAVSTPKMFVSSPLAYIENQGSDLLAAISELSDVPNMAGDLQKCYMLYNLCQ 2240
WD40-rpts
Query 2241 GFSCCIYLSLTDIDQIYSSMLNLAPKPAPIGGSENHVVTPPVKWPGVEALVALLGREKEDDAPQLRLLIIESFLAISMSL 2320
WD40-rpts
Query 2321 FCFALSAYDSRWLFRLSAHEIDPSKFGLIFGGGGESKKASHPPARPPRPAAPVVQKESTSENNGDNLRSRLNLRILGNEK 2400
WD40-rpts
Query 2401 LSTASKDSLPSEALHSKWVPPQKNIVQLFAEKPSVMMHEDDDDAYESDEEDKGNSYSDDEEDEDTLSCENAAPASFAWQL 2480
WD40-rpts
Query 2481 LRLALIQQQLHRVKQFLILVGFDPRDIPTVAPRIDSILQQLNSWISLQHQTLKNFPGGIPNDVLPDMTIDMSDQHLAASM 2560
WD40-rpts
Query 2561 KKYAVLVKKNNTPFESEDRKIQSIQRLWTFLVREDHLQEIFIKYIFSQHSMMESAPEPIDMIVGIDNNPHLPEAFKIVQK 2640
WD40-rpts
Query 2641 DSEPIVAFGCNQESPGLIVVSNGRELQEMDMSNVFKDQYDQTSWMWNRADLDMKNIHSKRDALRDNDDYQIFTDTNSQNV 2720
WD40-rpts (_
Query 2721 KHTNVMIKRHIPGVRRIDSHPHAPFYVTGSSDGSIKVWKWGAKDTVYTARVAGQHAKVSKIAFSCNGNKFAAVDGDGMLC 2800
WD40-rpts _________________WD 3_________________)(___________________WD 4_________________
Query 2801 LWQASQATEQKKPFFSQRCHNKSATDVRFLGHSASVLLTAGSSSLDYNLGLWDTLLPTNRALVHSWVAHPEGATCALYVP 2880
WD40-rpts __)(______________________WD 5______________________) (_________________WD
Query 2881 NQQTIFSGGRHGEICLWDIRQRQLRHTIKAFDQMHVVKTLATDSAQDLIVSGSSEGDIKIWSADAIPQLMYSLPGEHTAK 2960
WD40-rpts 6________________) (__________________WD 7_________________)
Query 2961 GGFSFRQVGQSTVQGVQQLFIDQNMRLFSCGADASLKFRTLPSIFNMTSLL 3011
WD40-rpts
 7 WD40-repeats found in QUERY=F54E4.1 (Len=3011): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 177-208 2.78 229.48 0.04915 25.0% 29.06 WD 2: Seg 38 919-954 3.44 256.56 0.02151 20.0% 20.58 WD 3: Seg 72 2719-2759 6.19 370.55 0.00063 32.5% 49.58 WD 4: Seg 76 2760-2803 5.56 344.31 0.00142 22.5% 57.25 WD 5: Seg 80 2804-2853 3.33 252.19 0.02459 22.5% 33.48 WD 6: Seg 82 2860-2898 6.41 379.31 0.00048 25.0% 51.25 WD 7: Seg 86 2902-2942 5.78 353.42 0.00107 25.0% 53.49Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 177-208 --------------------SLPY--KPKYIRYSPDGYYLA---LSGDRDCFIKIFY WD 2 919-954 --------------MAP-AAGHLS--SSSLYPACETPYVLV----SSDNDDSVRFWR WD 3 2719-2759 NV------K----HTNVMIKRHIP--GVRRIDSHPHAPFYV----TGSSDGSIKVWK WD 4 2760-2803 WG------AKDTVYTAR-VAGQHA--KVSKIAFSCNGNKFA----AVDGDGMLCLWQ WD 5 2804-2853 ASQATEQKK----PFFS-QRCHNK--SATDVRFLGHSASVLLTAGSSSLDYNLGLWD WD 6 2860-2898 -R------A----LVHS-WVAHPE--GATCALYVPNQQTIF----SGGRHGEICLWD WD 7 2902-2942 -R------Q----LRHT-IKAFDQMHVVKTLATDSAQDLIV----SGSSEGDIKIWS WD40 Template TG------E----CLRT-LSGHTS--GVTSVSFSPDGKRLV----SGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |