Input parameters:

  Query = F55B12.3a (Len=587)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F55B12.3a, Len=587):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWPRNDVHMDDGSMTPEDQEPVTDNDMEYNDNGEESSYSNGSSSSYNADKLSSSRPLQHKLDLSASPSRNNDLNPRVEHL 80  
WD40-rpts                                                                                      

Query       81 IALFKDLSSAEQMDAFTRLLQESNMTNIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYDLLKVAQVSKNWKLISEI 160 
WD40-rpts                                                                                      

Query      161 DKIWKSLGVEEFKHHPDPTDRVTGAWQGTAIAAGVTIPDHIQPCDLNVHRFLKLQKFGDIFERAADKSRYLRADKIEKNW 240 
WD40-rpts                                      (______________________WD 1_____________________

Query      241 NANPIMGSAVLRGHEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGVWTSQISQCGRYIVSGSTDRTV 320 
WD40-rpts      )   (________________WD 2________________)   (_________________WD 3_____________

Query      321 KVWSTVDGSLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQFDGTTVVSGGYDFTV 400 
WD40-rpts      ___)   (________________WD 4_______________)   (________________WD 5____________

Query      401 KIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQECVALLQGHTSLTSGMQLRGNILVSCN 480 
WD40-rpts      ___)   (_________________WD 6________________)      (________________WD 7_______

Query      481 ADSHVRVWDIHEGTCVHMLSGHRSAITSLQWFGRNMVATSSDDGTVKLWDIERGALIRDLVTLDSGGNGGCIWRLCSTST 560 
WD40-rpts      ________)   (________________WD 8________________)   (_____________________WD 9_

Query      561 MLACAVGSRNNTEETKVILLDFDAVYP 587 
WD40-rpts      ____________________)      

9 WD40-repeats found in QUERY=F55B12.3a (Len=587):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   193-241      5.26  332.01  0.00209       15.0%     31.04
  WD 2:  Seg  6   245-282      6.68  390.58  0.00034       35.0%     51.47
  WD 3:  Seg 10   286-324     10.83  562.01  1.7e-06       50.0%     53.44
  WD 4:  Seg 14   328-364      8.76  476.34  2.4e-05       47.5%     52.41
  WD 5:  Seg 18   368-404      8.41  461.99  3.7e-05       45.0%     55.41
  WD 6:  Seg 22   408-446     10.47  546.97  2.6e-06       45.0%     53.34
  WD 7:  Seg 26   453-489      7.53  425.67  0.00011       37.5%     52.13
  WD 8:  Seg 30   493-530      8.73  475.39  2.4e-05       40.0%     52.22
  WD 9:  Seg 34   534-581      5.38  336.71  0.00180       20.0%     54.54

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  193-241    AGVTIPDHIQPCDLNVH-----RFLKLQKFGDIFERAADKSRYLRADKI----EKNWN
   WD 2  245-282    -IM---------GSAVL-----RGHEDHVITCMQIHDD-VLVTGSDDNT----LKVWC
   WD 3  286-324    -GE---------VMYTL-----VGHTGGVWTSQISQCGRYIVSGSTDRT----VKVWS
   WD 4  328-364    -GS---------LLHTL-----QGHTSTVRCMAMA--GSILVTGSRDTT----LRVWD
   WD 5  368-404    -GR---------HLATL-----HGHHAAVRCVQF--DGTTVVSGGYDFT----VKIWN
   WD 6  408-446    -GR---------CIRTL-----TGHNNRVYSLLFESERSIVCSGSLDTS----IRVWD
   WD 7  453-489    -QE---------CVALL-----QGHTSLTSGMQLR--GNILVSCNADSH----VRVWD
   WD 8  493-530    -GT---------CVHML-----SGHRSAITSLQWFGRN-MVATSSDDGT----VKLWD
   WD 9  534-581    -GA---------LIRDLVTLDSGGNGGCIWRLCSTSTMLACAVGSRNNTEETKVILLD

   WD40 Template    TGE---------CLRTL-----SGHTSGVTSVSFSPDGKRLVSGSEDGT----IKVWD