Input parameters:

  Query = F55B12.3b (Len=585)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F55B12.3b, Len=585):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWPRNDVHMDDGSMTPEDQEPVTDNDMEYNDNGEESSYSNGSSSSYNADKLSSPLQHKLDLSASPSRNNDLNPRVEHLIA 80  
WD40-rpts                                                                                      

Query       81 LFKDLSSAEQMDAFTRLLQESNMTNIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYDLLKVAQVSKNWKLISEIDK 160 
WD40-rpts                                                                                      

Query      161 IWKSLGVEEFKHHPDPTDRVTGAWQGTAIAAGVTIPDHIQPCDLNVHRFLKLQKFGDIFERAADKSRYLRADKIEKNWNA 240 
WD40-rpts                                    (______________________WD 1_____________________) 

Query      241 NPIMGSAVLRGHEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGVWTSQISQCGRYIVSGSTDRTVKV 320 
WD40-rpts        (________________WD 2________________)   (_________________WD 3_______________

Query      321 WSTVDGSLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQFDGTTVVSGGYDFTVKI 400 
WD40-rpts      _)   (________________WD 4_______________)   (________________WD 5______________

Query      401 WNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQECVALLQGHTSLTSGMQLRGNILVSCNAD 480 
WD40-rpts      _)   (_________________WD 6________________)      (________________WD 7_________

Query      481 SHVRVWDIHEGTCVHMLSGHRSAITSLQWFGRNMVATSSDDGTVKLWDIERGALIRDLVTLDSGGNGGCIWRLCSTSTML 560 
WD40-rpts      ______)   (________________WD 8________________)   (_____________________WD 9___

Query      561 ACAVGSRNNTEETKVILLDFDAVYP 585 
WD40-rpts      __________________)      

9 WD40-repeats found in QUERY=F55B12.3b (Len=585):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   191-239      5.31  333.83  0.00197       15.0%     31.46
  WD 2:  Seg  7   243-280      7.00  403.80  0.00022       35.0%     50.67
  WD 3:  Seg 11   284-322     10.90  564.87  1.5e-06       50.0%     53.71
  WD 4:  Seg 15   326-362      8.80  478.01  2.2e-05       47.5%     52.00
  WD 5:  Seg 19   366-402      8.43  462.79  3.6e-05       45.0%     54.34
  WD 6:  Seg 23   406-444     10.45  546.36  2.7e-06       45.0%     53.73
  WD 7:  Seg 27   451-487      7.53  425.68  0.00011       37.5%     52.50
  WD 8:  Seg 31   491-528      8.76  476.62  2.3e-05       40.0%     52.83
  WD 9:  Seg 35   532-579      5.27  332.45  0.00206       20.0%     54.56

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  191-239    AGVTIPDHIQPCDLNVH-----RFLKLQKFGDIFERAADKSRYLRADKI----EKNWN
   WD 2  243-280    -IM---------GSAVL-----RGHEDHVITCMQIHDD-VLVTGSDDNT----LKVWC
   WD 3  284-322    -GE---------VMYTL-----VGHTGGVWTSQISQCGRYIVSGSTDRT----VKVWS
   WD 4  326-362    -GS---------LLHTL-----QGHTSTVRCMAMA--GSILVTGSRDTT----LRVWD
   WD 5  366-402    -GR---------HLATL-----HGHHAAVRCVQF--DGTTVVSGGYDFT----VKIWN
   WD 6  406-444    -GR---------CIRTL-----TGHNNRVYSLLFESERSIVCSGSLDTS----IRVWD
   WD 7  451-487    -QE---------CVALL-----QGHTSLTSGMQLR--GNILVSCNADSH----VRVWD
   WD 8  491-528    -GT---------CVHML-----SGHRSAITSLQWFGRN-MVATSSDDGT----VKLWD
   WD 9  532-579    -GA---------LIRDLVTLDSGGNGGCIWRLCSTSTMLACAVGSRNNTEETKVILLD

   WD40 Template    TGE---------CLRTL-----SGHTSGVTSVSFSPDGKRLVSGSEDGT----IKVWD