Input parameters:

  Query = F55F8.3 (Len=910)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F55F8.3, Len=910):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDTNFKLSNCIGTVYRDGQVAFSKDGYSVISPIGNKLSIFDLRNNTSKTLDIDCNYNIKRLSISPSGYHLLASDERGVVH 80  
WD40-rpts            (_______________WD 1______________)   (_________________WD 2______________

Query       81 FVHLLSEFKIYTFRSNKPIGSLQWSPDATRVAICRENDLQIHEFGKSIENKVYNPFSLSRTYKLSSDSLKTIDWSDDANL 160 
WD40-rpts      __)   (________________WD 3_______________)            (_________________WD 4___

Query      161 LVSGGEDRVVRVVGAKDFKNLFIHPLASHKGYIVNCQFMKNSYDMITVCKRGLANVWTCNLRPGELVEGIWKKDEEGSDD 240 
WD40-rpts      _____________)(___________________WD 5___________________)                      

Query      241 IEMLEDGEQKVEKIFFEKTKKYWLSESSGSGKSVDVTAARFHKETNILATAFNNGVIVLHEIPSFALVHNLRVSEMRIQT 320 
WD40-rpts                     (____________________WD 6____________________)   (_______________

Query      321 VAWNLTGDWLAIGCGKGSTAQLVVWEWQSESYVMKQQAHSLRITTAEYSPDGSLMATGAEDGKVKIWNSRSSFCTVTFDE 400 
WD40-rpts      ___WD 7__________________)   (_________________WD 8________________)   (________

Query      401 HTSGVTAVKWTQSGRAILSASLDGTVRAHDLKRYRNFRTLVCPEPTQLATLAVDKAGDLVIAGAKEVFNIYIWSFETGHL 480 
WD40-rpts      _________WD 9________________)(___________________WD10___________________)   (__

Query      481 LDILSGHESAISSIDIHGNHIVSGSWDRTIKMWTIVDSQAETVEVSHEALDVKFSPAGDEIAVLTSDGVITFFEAKEMIN 560 
WD40-rpts      ______________WD11_______________)(_________________WD12_________________)      

Query      561 LGSIDTKLDTDPARGSRDTITRQSAAKTKTFTRIRFSPDGNLLLAGGESNNFCLYSVPERMILKKWQITANRSLDGVILD 640 
WD40-rpts          (_______________________WD13_______________________)(______________________W

Query      641 FNRRNFTEFGNMQLVDTSDEEDELEPNNKMSIKLPGTKNFDLGERRARPEVNIYEVTYCPTGRRFAICSTEGVSVYSLDT 720 
WD40-rpts      D14______________________)             (________________WD15________________)   

Query      721 ISMFDPFQLDSQTNAEVIKRAVWNNDYSTAIMASLRLNNAQYITECLESTSISQIPLVASSLPLMYAERLLKWMVEGNVM 800 
WD40-rpts                                                                                      

Query      801 SSTRHVHFYMIWLRAILQHHGMQLKGRADVATLTGIQQIVAHHQQHITKLANQNKFALNWLVKIRQSKKSVKKEEEEEED 880 
WD40-rpts                                                                                      

Query      881 VSDESDDEDIEDESAGSDDEDSDDSVEIIE 910 
WD40-rpts                                    

15 WD40-repeats found in QUERY=F55F8.3 (Len=910):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-41       4.51  300.77  0.00549       22.5%     45.79
  WD 2:  Seg  4    45-83       6.32  375.63  0.00054       17.5%     59.33
  WD 3:  Seg  8    87-123      3.69  266.96  0.01562       15.0%     56.54
  WD 4:  Seg 12   136-174      7.71  433.09  9.1e-05       27.5%     54.65
  WD 5:  Seg 16   175-218      7.22  412.95  0.00017       15.0%     52.55
  WD 6:  Seg 23   256-301      6.30  374.80  0.00055       20.0%     52.38
  WD 7:  Seg 27   305-346      6.26  373.36  0.00058       20.0%     57.84
  WD 8:  Seg 31   350-388      9.50  506.93  9.1e-06       30.0%     58.12
  WD 9:  Seg 35   392-430      9.90  523.74  5.4e-06       40.0%     55.85
  WD10:  Seg 39   431-474      5.19  329.12  0.00228       10.0%     53.11
  WD11:  Seg 43   478-514      8.21  453.77  4.8e-05       45.0%     53.34
  WD12:  Seg 47   515-554      7.12  408.68  0.00019       20.0%     54.99
  WD13:  Seg 52   565-616      6.93  400.85  0.00025       27.5%     49.40
  WD14:  Seg 55   617-666      4.80  313.06  0.00375       17.5%     34.14
  WD15:  Seg 59   680-717      5.35  335.76  0.00186       17.5%     50.36

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-41     ----------------L----------S------NCIGTVYRDGQVAFSKDGYSVISPIGN--K---LSIFD
   WD 2   45-83     -NT------------SK----------T------LDIDCNYNIKRLSISPSGYHLLASDER-GV---VHFVH
   WD 3   87-123    -EF------------KI----------Y------TFRSNKP-IGSLQWSPDATRVAICR-E-ND---LQIHE
   WD 4  136-174    -FS------------LS----------R------TYKLSSDSLKTIDWSDDANLLVSGGED-RV---VRVVG
   WD 5  175-218    AKD--------FKNLFI----------H------PLASHKGYIVNCQFMKNSYDMITVCKR-GL---ANVWT
   WD 6  256-301    FEK------------TK----------KYWLSESSGSGKSVDVTAARFHKETNILATAFNN-GV---IVLHE
   WD 7  305-346    -FA------------LV----------H------NLRVSEMRIQTVAWNLTGDWLAIGCGK-GSTAQLVVWE
   WD 8  350-388    -ES------------YV----------M------KQQAHSLRITTAEYSPDGSLMATGAED-GK---VKIWN
   WD 9  392-430    -SF------------CT----------V------TFDEHTSGVTAVKWTQSGRAILSASLD-GT---VRAHD
   WD10  431-474    LKR---------YRNFR----------T------LVCPEPTQLATLAVDKAGDLVIAGAKEVFN---IYIWS
   WD11  478-514    -GH------------LL----------D------ILSGHESAISSIDIH--GNHIVSGSWD-RT---IKMWT
   WD12  515-554    IVD------------SQ----------A------ETVEVSHEALDVKFSPAGDEIAVLTSD-GV---ITFFE
   WD13  565-616    DTKLDTDPARGSRDTIT----------R------QSAAKTKTFTRIRFSPDGNLLLAGGES-NN---FCLYS
   WD14  617-666    VPE------------RMILKKWQITANR------SLDGVILDFNRRNFTEFGNMQLVDTSD-EE---DELEP
   WD15  680-717    -FD------------LG----------E------RRARPEVNIYEVTYCPTGRRFAICSTE-G----VSVYS

   WD40 Template    TGE------------CL----------R------TLSGHTSGVTSVSFSPDGKRLVSGSED-GT---IKVWD