Input parameters:

  Query = F55F8.5 (Len=439)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (F55F8.5, Len=439):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLADLMEVENGDHSINQKHVQITFFSKDEEIPQIPDAVFDVPTGAECDDMNLLLNKTIEANDGAWKERRFEFLVGETFL 80  
WD40-rpts                                                                                      

Query       81 RTSLAEFIEEYEVETETILKVECVIGIEAPKPLHDIQAPDWVSSVQIANGHIFSTTYGGDIVIVDRKGKETKLAVNSANR 160 
WD40-rpts                                  (________________WD 1_______________)   (___________

Query      161 LLKCISIVKAPSKKNQLDGTEFVVGGENQLLTLYAIEKGALVEKLILRGHERAVECVSVNSDSTRAISGSVDTNLKIWNL 240 
WD40-rpts      __________WD 2____________________)(___________________WD 3___________________) 

Query      241 DASDEATTYEKEEEEESAKKRRKKETKTKVPMVTIGGHRDKVSAVEWCPWNSGHAFSCSWDHTIVEWDLELAGEISRIKG 320 
WD40-rpts                                  (_________________WD 4_________________)   (________

Query      321 PKSFTSIDLHPKSDLLISSCTDAIPRLYDPKNRDGSMVKQSFIGHQNGWVEAVKWNPLDTNQFVSVSTDKTAKMWDVRSS 400 
WD40-rpts      ________WD 5________________)      (__________________WD 6_________________)    

Query      401 KSSLFDIHGHDDRILCATWNEGLIATGSADCTIKIFETA 439 
WD40-rpts      (________________WD 7_______________)  

7 WD40-repeats found in QUERY=F55F8.5 (Len=439):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   109-145      5.01  321.48  0.00289       17.5%     38.01
  WD 2:  Seg  9   149-195      6.48  382.30  0.00044       17.5%     59.09
  WD 3:  Seg 13   196-239      8.92  483.09  1.9e-05       35.0%     54.93
  WD 4:  Seg 18   269-308      7.76  435.03  8.5e-05       32.5%     53.23
  WD 5:  Seg 22   312-349      6.97  402.65  0.00023       22.5%     53.31
  WD 6:  Seg 26   356-396      6.98  403.04  0.00023       37.5%     53.63
  WD 7:  Seg 30   401-437      6.19  370.16  0.00064       22.5%     50.55

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  109-145    -AP----KPLHDIQAPDW-VSSVQI--------AN-GH--IFSTTYGGDIVIVD
   WD 2  149-195    -KE----TKLAVNSANRL-LKCISIVKAPSKKNQL-DGTEFVVGGENQLLTLYA
   WD 3  196-239    IEKGALVEKLILRGHERA-VECVSV--------NS-DSTRAISGSVDTNLKIWN
   WD 4  269-308    -KV----PMVTIGGHRDK-VSAVEW--------CPWNSGHAFSCSWDHTIVEWD
   WD 5  312-349    -AG----EISRIKGPKS--FTSIDL--------HP-KSDLLISSCTDAIPRLYD
   WD 6  356-396    -SM----VKQSFIGHQNGWVEAVKW--------NPLDTNQFVSVSTDKTAKMWD
   WD 7  401-437    -KS----SLFDIHGHDDR-ILCATW-----------NEGLIATGSADCTIKIFE

   WD40 Template    TGE----CLRTLSGHTSG-VTSVSF--------SP-DGKRLVSGSEDGTIKVWD