Input parameters:

  Query = H24G06.1a (Len=1680)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (H24G06.1a, Len=1680):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPIWFNFRITKEMKCESARLKNVVGRSGVTVNGIALHHASDTLLQVAGSSIIVSSTASHDRFEGHLISQTKQQFTCVAV 80  
WD40-rpts                                                               (____________________WD

Query       81 TSCGKYAATGETGHQPAVRLWQLRDAQGNFVGRLVRSMQSHTVSITIVRFTPDDSTLISIGCQHDAQIFTWDWRTGHDLG 160 
WD40-rpts       1___________________)         (__________________WD 2_________________)(_______

Query      161 VGKLMSPVNALTISFDSSMCVTVGSKSVKYWFLPLASDGMNKRTGLTSRSAILADKRNVNFVDAAFCDSTNRMVTVTSSG 240 
WD40-rpts      __________WD 3_________________)    (_________________WD 4________________)     

Query      241 EILEFNGNKKVSCVYQFKNFFVQYVKCYTWKESGDFKAICIARVPEGLLVGCSDGLVRLFCLIGDDLDFLADLAPPTHLF 320 
WD40-rpts                      (____________________WD 5___________________) (_________________

Query      321 QDPSNVYDPQQLQNHPEDAIFPEPRCLVASSSSPTFVVGYADRSLIEFARENKSWSFRRASLGHTGSVNCIEPFPSSSPC 400 
WD40-rpts      ______________WD 6______________________________)     (____________________WD 7_

Query      401 LPIGTLITGGSDGTIRFWNFNGDSEDKKEIANILCPSLLKVIFLDENPDLLVDKRNLESVGPSNDENQSASSSGVLCTRV 480 
WD40-rpts      __________________)                                  (_____________________WD 8_

Query      481 SHDGRMLIAGTATGMLYIVDLSFSDTPIIDVINAHDHDVTSIDFSDHASTSSHDHPIFLASGGRDRFVHVFRRIPYSSQF 560 
WD40-rpts      ___________________)     (_____________________WD 9____________________)       (

Query      561 VHCAVLDGHQSAIKSIKFASNNGQLHLYTAASDRSLIIWKLSSFSDQHCEFTRVQMISVASSIGDMNFIKHVDLFVVAGH 640 
WD40-rpts      __________________WD10_________________)(_____________________WD11______________

Query      641 DRMLRQFDINGKTVREVKGTDDDVAHSGKILKVAIDHSGSYAISVCSDKFVYVTDLRSGVCLAVLCGFGAPATDATFSDD 720 
WD40-rpts      _______)  (____________________WD12___________________)   (_________________WD13

Query      721 FKNVIVTTSNGSIFIWQLAKNLTERMISAQVRLMEEVTMRTATPDSLLGSGSETISGDSNSFGRPLGAPEFSGSSASLYS 800 
WD40-rpts      ________________)   (_________________WD14________________)                     

Query      801 DDDDSTRFSSSVRSSRTKRILPNGGHLIGDSSYARVGDSSFSPAVQSAPAVERRTHTNLFSHDQYETDVSETQSDFVSSR 880 
WD40-rpts                            (_________________WD15________________)                   

Query      881 RKTRLFSDEDQDSNLGSAQYLAAPINEDRRSASPSLYPPQDQLRGYQSSKSMMNLRDVTGGGVRVQTAKELMMSQIASQR 960 
WD40-rpts                         (________________WD16________________)                       

Query      961 NSQSGSSSHLSSTNTSGRMKWGDMPQQSNNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGYRDHGTSYPMPDSTHPPP 1040
WD40-rpts                                                                                      

Query     1041 LAPRTTSRVLSTAPSQQALQQIQASSPFRRKSMDRNSLSRRFLENGGAQPKTVWSPSALANQGAPRRSNSNLFAATNLEV 1120
WD40-rpts                                                                                      

Query     1121 PPTSTNLSRRHTDKQPQKLRFTTTVQTREISLDDEVVESDDDAITSTTFEPKYKNRIGYRRPSTVTVDTRDADVARRRVA 1200
WD40-rpts                                                                                      

Query     1201 GTSFKKSDRADDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIVGRNLQQRRRGSDVSYVRSATRGRDEMR 1280
WD40-rpts                                                                                      

Query     1281 KSTDALNKLMAVRSKLHQSSENLRKSTENLALLKNLEEASNHSTPKARTRSSSNLRNADNLGNMESFGTFDADSRMKSGS 1360
WD40-rpts                                                                                      

Query     1361 TSSLAHSRMMARSIGNLNDSLAMEGSNNYDSPSQRLANTIQMMRKASNPDLTAPEQFEDTGSPFAQRMARGAVQKKMERY 1440
WD40-rpts                                                                                      

Query     1441 RAKNKSGNVVGRNQTSEESDSNNSDMMPLSINKRALTAGNRSTTGSDFSPASSRGSSSLAMGSGPIGSGLPSSRRLYDQQ 1520
WD40-rpts                                                                                      

Query     1521 RSVLSSSGTPRRTGNNYLVTKMSEQMNKSMEGPDLGSDESPRSSVNSHEWQNLMENSQDGTKNPLICHVQDCMEQLRIHV 1600
WD40-rpts                                                                                      

Query     1601 DKSLQAKKLVEDDTSLAMEQKKIVMCEIDRSIERLIEKLAPNQLSRSNDRSNGNVSVGNDYTPKGANIYGILKENLSSRQ 1680
WD40-rpts                                                                                      

16 WD40-repeats found in QUERY=H24G06.1a (Len=1680):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    58-102      4.32  293.06  0.00698       17.5%     49.33
  WD 2:  Seg  9   112-152      7.20  412.12  0.00017       37.5%     46.42
  WD 3:  Seg 13   153-192      3.91  276.33  0.01170       17.5%     54.00
  WD 4:  Seg 17   197-235      4.17  286.93  0.00843       12.5%     42.19
  WD 5:  Seg 22   257-301      4.03  281.18  0.01007       10.0%     52.48
  WD 6:  Seg 26   303-369      2.85  232.48  0.04488       20.0%     39.74
  WD 7:  Seg 29   375-419      6.03  363.87  0.00078       32.5%     53.44
  WD 8:  Seg 35   454-500      6.46  381.31  0.00045       27.5%     44.93
  WD 9:  Seg 38   506-552      6.11  366.87  0.00071       27.5%     48.94
  WD10:  Seg 42   560-600      6.12  367.41  0.00070       22.5%     50.45
  WD11:  Seg 46   601-648      4.84  314.76  0.00356       12.5%     56.21
  WD12:  Seg 50   651-695      5.66  348.60  0.00125       25.0%     57.54
  WD13:  Seg 54   699-737      8.14  450.75  5.2e-05       32.5%     57.82
  WD14:  Seg 58   741-779      5.24  331.22  0.00214       17.5%     44.12
  WD15:  Seg 65   823-861      4.36  294.84  0.00660       17.5%     33.60
  WD16:  Seg 71   900-937      4.06  282.21  0.00976        7.5%     21.28

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   58-102    ASH--------D-------R-------------------FEGHLIS-----Q------TKQQ-----FTCVAVTSCGK------Y--------AAT--GETGHQPAVRLWQ
   WD 2  112-152    -GR--------L-------V----------------------RSMQ-----S------HTVS-----ITIVRFTPDDS------T--------LISIGC--QHDAQIFTWD
   WD 3  153-192    WRT-------GH-------D----------------------LGVG-----K------LMSP-----VNALTISFDSS------M--------CVT--V--G-SKSVKYWF
   WD 4  197-235    -SD--------G-------M----------------------NKRT-----G------LTSR-----SAILADKRNVN------F--------VDA--A--FCDSTNRMVT
   WD 5  257-301    FKN--------F-------F----------------------VQYVKCYTWK------ESGD-----FKAICIARVPE------G--------LLV--G--CSDGLVRLFC
   WD 6  303-369    IGD--------D-------LDFLADLAPPTHLFQDPSNVYDPQQLQ-----N------HPEDAIFPEPRCLVASSSSP------T--------FVV--G--YADRSLIEFA
   WD 7  375-419    -WS--------F-------R----------------------RASL-----G------HTGS-----VNCIEPFPSSSPCLPIGT--------LIT--G--GSDGTIRFWN
   WD 8  454-500    KRN--------LESVGPSND----------------------ENQS-----A------SSSG-----VLCTRVSHDGR------M--------LIA--G--TATGMLYIVD
   WD 9  506-552    -TP--------I-------I----------------------DVIN-----A------HDHD-----VTSIDFSDHAS------TSSHDHPIFLAS--G--GRDRFVHVFR
   WD10  560-600    -FV--------H-------C----------------------AVLD-----G------HQSA-----IKSIKFASNNG------Q------LHLYT--A--ASDRSLIIWK
   WD11  601-648    LSSFSDQHCEFT-------R----------------------VQMI-----S------VASS-----IGDMNFIKHVD------L--------FVV--A--GHDRMLRQFD
   WD12  651-695    -GK--------T-------V----------------------REVK-----GTDDDVAHSGK-----ILKVAIDHSGS------Y--------AIS--V--CSDKFVYVTD
   WD13  699-737    -GV--------C-------L----------------------AVLC-----G------FGAP-----ATDATFSDDFK------N--------VIV--T--TSNGSIFIWQ
   WD14  741-779    -NL--------T-------E----------------------RMIS-----A------QVRL-----MEEVTMRTATP------D--------SLL--G--SGSETISGDS
   WD15  823-861    NGG--------H-------L-----------------------IGD-----S------SYAR-----VGDSSFSPAVQ------S--------APA--V--ERRTHTNLFS
   WD16  900-937    --Y--------L-------A----------------------APIN-----E------DRRS-----ASPSLYPPQDQ------L--------RGY--Q--SSKSMMNLRD

   WD40 Template    TGE--------C-------L----------------------RTLS-----G------HTSG-----VTSVSFSPDGK------R--------LVS--G--SEDGTIKVWD