Input parameters:

  Query = H24G06.1b (Len=1601)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (H24G06.1b, Len=1601):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPIWFNFRITKEMKCESARLKNVVGRSGVTVNGIALHHASDTLLQVAGSSIIVSSTASHDRFEGHLISQTKQQFTCVAV 80  
WD40-rpts                                                               (____________________WD

Query       81 TSCGKYAATGETGHQPAVRLWQLRDAQGNFVGRLVRSMQSHTVSITIVRFTPDDSTLISIGCQHDAQIFTWDWRTGHDLG 160 
WD40-rpts       1___________________)         (__________________WD 2_________________)(_______

Query      161 VGKLMSPVNALTISFDSSMCVTVGSKSVKYWFLPLASDGMNKRTGLTSRSAILADKRNVNFVDAAFCDSTNRMVTVTSSG 240 
WD40-rpts      __________WD 3_________________)    (_________________WD 4________________)     

Query      241 EILEFNGNKKVSCVYQFKNFFVQYVKCYTWKESGDFKAICIARVPEGLLVGCSDGLVRLFCLIGDDLDFLADLAPPTHLF 320 
WD40-rpts                      (____________________WD 5___________________)                   

Query      321 QDPSNVYDPQQLQNHPEDAIFPEPRCLVASSSSPTFVVGYADRSLIEFARENKSWSFRRASLGHTGSVNCIEPFPSSSPC 400 
WD40-rpts                                                            (____________________WD 6_

Query      401 LPIGTLITGGSDGTIRFWNFNGDSEDKKEIANILCPSLLKVIFLDENPDLLVDKRNLESVGPSNDENQSASSSGVLCTRV 480 
WD40-rpts      __________________)                                             (_______________

Query      481 SHDGRMLIAGTATGMLYIVDLSFSDTPIIDVINAHDHDVTSIDFSDHASTSSHDHPIFLASGGRDRFVHVFRRIPYSSQF 560 
WD40-rpts      WD 7_______________)(_______________________WD 8_______________________)       (

Query      561 VHCAVLDGHQSAIKSIKFASNNGQLHLYTAASDRSLIIWKLSSFSDQHCEFTRVQMISVASSIGDMNFIKHVDLFVVAGH 640 
WD40-rpts      __________________WD 9_________________)(_____________________WD10______________

Query      641 DRMLRQFDINGKTVREVKGTDDDVAHSGKILKVAIDHSGSYAISVCSDKFVYVTDLRSGVCLAVLCGFGAPATDATFSDD 720 
WD40-rpts      _______)  (____________________WD11___________________)   (_________________WD12

Query      721 FKNVIVTTSNGSIFIWQLAKNLTERMISAQVRLMEEVTMRTATPDSLLGSGSETISGDSNSFGRPLGAPEFSGSSASLYS 800 
WD40-rpts      ________________)(__________________WD13__________________)                     

Query      801 DDDDSTRFSSSVRSSRTKRILPNGGHLIGDSSYARVGDSSFSPAVQSAPAVERRTHTNLFSHDQYETDVSETQSDFVSSR 880 
WD40-rpts                            (_________________WD14________________)                   

Query      881 RKTRLFSDEDQDSNLGSAQYLAAPINEDRRSASPSLYPPQDQLRGYQSSKSMMNLRDVTGGGVRVQTAKELMMSQIASQR 960 
WD40-rpts                                                     (________________________WD15____

Query      961 NSQSGSSSHLSSTNTSGRMKWGDMPQQSNNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGYRDHGTSYPMPDSTHPPP 1040
WD40-rpts      ____________________)                                                           

Query     1041 LAPRTTSRVLSTAPSQQALQQIQASSPFRRKSMDRNSLSRRFLENGGAQPKTVWSPSALANQGAPRRSNSNLFAATNLEV 1120
WD40-rpts                                                                                      

Query     1121 PPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIVGRNLQQRRRGSDVSYVRSATRGRDEM 1200
WD40-rpts                                                                                      

Query     1201 RKSTDALNKLMAVRSKLHQSSENLRKSTENLALLKNLEEASNHSTPKARTRSSSNLRNADNLGNMESFGTFDADSRMKSG 1280
WD40-rpts                                                                                      

Query     1281 STSSLAHSRMMARSIGNLNDSLAMEGSNNYDSPSQRLANTIQMMRKASNPDLTAPEQFEDTGSPFAQRMARGAVQKKMER 1360
WD40-rpts                                                                                      

Query     1361 YRAKNKSGNVVGRNQTSEESDSNNSDMMPLSINKRALTAGNRSTTGSDFSPASSRGSSSLAMGSGPIGSGLPSSRRLYDQ 1440
WD40-rpts                                                                                      

Query     1441 QRSVLSSSGTPRRTGNNYLVTKMSEQMNKSMEGPDLGSDESPRSSVNSHEWQNLMENSQDGTKNPLICHVQDCMEQLRIH 1520
WD40-rpts                                                                                      

Query     1521 VDKSLQAKKLVEDDTSLAMEQKKIVMCEIDRSIERLIEKLAPNQLSRSNDRSNGNVSVGNDYTPKGANIYGILKENLSSR 1600
WD40-rpts                                                                                      

Query     1601 Q 1601
WD40-rpts       

15 WD40-repeats found in QUERY=H24G06.1b (Len=1601):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    58-102      4.07  282.79  0.00958       17.5%     50.96
  WD 2:  Seg  9   112-152      7.14  409.42  0.00019       37.5%     47.66
  WD 3:  Seg 13   153-192      3.90  275.86  0.01187       17.5%     50.89
  WD 4:  Seg 17   197-235      4.59  304.21  0.00494       12.5%     41.98
  WD 5:  Seg 22   257-301      4.39  295.96  0.00638       10.0%     53.59
  WD 6:  Seg 29   375-419      6.44  380.50  0.00046       32.5%     54.54
  WD 7:  Seg 36   465-500      6.68  390.52  0.00034       27.5%     43.60
  WD 8:  Seg 39   501-552      5.92  359.20  0.00090       27.5%     50.27
  WD 9:  Seg 43   560-600      6.31  375.52  0.00054       22.5%     50.68
  WD10:  Seg 47   601-648      5.06  323.88  0.00269       12.5%     56.65
  WD11:  Seg 51   651-695      6.07  365.41  0.00074       25.0%     57.64
  WD12:  Seg 55   699-737      7.79  436.33  8.2e-05       32.5%     57.94
  WD13:  Seg 59   738-779      4.89  316.65  0.00336       20.0%     45.95
  WD14:  Seg 66   823-861      4.61  305.12  0.00480       17.5%     34.46
  WD15:  Seg 74   928-981      3.29  250.57  0.02584       17.5%     28.28

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   58-102    AS----H-----DRFEG--HL-----ISQ------TKQQFTCVAV--------------TSCGK------Y--------AAT--GETGHQPAVRLWQ
   WD 2  112-152    -G----R--------LV--RS-----MQS------HTVSITIVRF--------------TPDDS------T--------LISIGC--QHDAQIFTWD
   WD 3  153-192    WR----T--------GH-DLG-----VGK------LMSPVNALTI--------------SFDSS------M--------CVT--V--G-SKSVKYWF
   WD 4  197-235    -S----D--------GM--NK-----RTG------LTSRSAILAD--------------KRNVN------F--------VDA--A--FCDSTNRMVT
   WD 5  257-301    FK----N--------FF--VQYVKCYTWK------ESGDFKAICI--------------ARVPE------G--------LLV--G--CSDGLVRLFC
   WD 6  375-419    -W----S--------FR--RA-----SLG------HTGSVNCIEP--------------FPSSSPCLPIGT--------LIT--G--GSDGTIRFWN
   WD 7  465-500    ----------------D--EN-----QSA------SSSGVLCTRV--------------SHDGR------M--------LIA--G--TATGMLYIVD
   WD 8  501-552    LSFSDTP--------II--DV-----INA------HDHDVTSIDF--------------SDHAS------TSSHDHPIFLAS--G--GRDRFVHVFR
   WD 9  560-600    -F----V--------HC--AV-----LDG------HQSAIKSIKF--------------ASNNG------Q------LHLYT--A--ASDRSLIIWK
   WD10  601-648    LS----SFSDQHCEFTR--VQ-----MIS------VASSIGDMNF--------------IKHVD------L--------FVV--A--GHDRMLRQFD
   WD11  651-695    -G----K--------TV--RE-----VKGTDDDVAHSGKILKVAI--------------DHSGS------Y--------AIS--V--CSDKFVYVTD
   WD12  699-737    -G----V--------CL--AV-----LCG------FGAPATDATF--------------SDDFK------N--------VIV--T--TSNGSIFIWQ
   WD13  738-779    LA----K--------NLTERM-----ISA------QVRLMEEVTM--------------RTATP------D--------SLL--G--SGSETISGDS
   WD14  823-861    NG----G--------HL---I-----GDS------SYARVGDSSF--------------SPAVQ------S--------APA--V--ERRTHTNLFS
   WD15  928-981    SS----K--------SM--MN-----LRD------VTGGGVRVQTAKELMMSQIASQRNSQSGS------S--------SHL--S--STNTSGRMKW

   WD40 Template    TG----E--------CL--RT-----LSG------HTSGVTSVSF--------------SPDGK------R--------LVS--G--SEDGTIKVWD