Input parameters:

  Query = H24G06.1c (Len=760)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (H24G06.1c, Len=760):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPIWFNFRITKEMKCESARLKNVVGRSGVTVNGIALHHASDTLLQVAGSSIIVSSTASHDRFEGHLISQTKQQFTCVAV 80  
WD40-rpts                        (_________________WD 1________________)(____________________WD

Query       81 TSCGKYAATGETGHQPAVRLWQLRDAQGNFVGRLVRSMQSHTVSITIVRFTPDDSTLISIGCQHDAQIFTWDWRTGHDLG 160 
WD40-rpts       2___________________)         (__________________WD 3_________________)  (_____

Query      161 VGKLMSPVNALTISFDSSMCVTVGSKSVKYWFLPLASDGMNKRTGLTSRSAILADKRNVNFVDAAFCDSTNRMVTVTSSG 240 
WD40-rpts      ___________WD 4________________)    (_________________WD 5________________)     

Query      241 EILEFNGNKKVSCVYQFKNFFVQYVKCYTWKESGDFKAICIARVPEGLLVGCSDGLVRLFCLIGDDLDFLADLAPPTHLF 320 
WD40-rpts                       (___________________WD 6___________________)  (________________

Query      321 QDPSNVYDPQQLQNHPEDAIFPEPRCLVASSSSPTFVVGYADRSLIEFARENKSWSFRRASLGHTGSVNCIEPFPSSSPC 400 
WD40-rpts      ______________WD 7______________________________)     (____________________WD 8_

Query      401 LPIGTLITGGSDGTIRFWNFNGDSEDKKEIANILCPSLLKVIFLDENPDLLVDKRNLESVGPSNDENQSASSSGVLCTRV 480 
WD40-rpts      __________________)   (__________________WD 9__________________)(_______________

Query      481 SHDGRMLIAGTATGMLYIVDLSFSDTPIIDVINAHDHDVTSIDFSDHASTSSHDHPIFLASGGRDRFVHVFRRIPYSSQF 560 
WD40-rpts      WD10_______________)     (_____________________WD11____________________)       (

Query      561 VHCAVLDGHQSAIKSIKFASNNGQLHLYTAASDRSLIIWKLSSFSDQHCEFTRVQMISVASSIGDMNFIKHVDLFVVAGH 640 
WD40-rpts      __________________WD12_________________)(_____________________WD13______________

Query      641 DRMLRQFDINGKTVREVKGTDDDVAHSGKILKVAIDHSGSYAISVCSDKFVYVTDLRSGVCLAVLCGFGAPATDATFSDD 720 
WD40-rpts      _______)          (________________WD14_______________)   (_________________WD15

Query      721 FKNVIVTTSNGSIFIWQLAKNLTERMISAQVRLMEEVTMR 760 
WD40-rpts      ________________)                       

15 WD40-repeats found in QUERY=H24G06.1c (Len=760):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    19-57       6.57  385.85  0.00039        7.5%     46.35
  WD 2:  Seg  6    58-102      6.13  367.96  0.00068       17.5%     54.64
  WD 3:  Seg 10   112-152      7.84  438.42  7.7e-05       37.5%     48.12
  WD 4:  Seg 14   155-192      5.47  340.75  0.00159       17.5%     53.61
  WD 5:  Seg 18   197-235      6.46  381.69  0.00045       12.5%     44.25
  WD 6:  Seg 23   258-301      6.66  389.81  0.00035       10.0%     54.68
  WD 7:  Seg 27   304-369      4.28  291.46  0.00733       15.0%     43.52
  WD 8:  Seg 30   375-419      7.45  422.25  0.00013       32.5%     53.28
  WD 9:  Seg 34   423-464      4.04  281.72  0.00991        7.5%     22.17
  WD10:  Seg 37   465-500      7.91  441.47  7.0e-05       27.5%     43.87
  WD11:  Seg 40   506-552      6.62  388.00  0.00037       27.5%     49.54
  WD12:  Seg 44   560-600      7.09  407.65  0.00020       22.5%     55.38
  WD13:  Seg 48   601-648      6.55  385.37  0.00040       12.5%     56.78
  WD14:  Seg 53   659-695      6.99  403.39  0.00023       17.5%     43.09
  WD15:  Seg 56   699-737      9.16  493.21  1.4e-05       32.5%     58.30

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-57     -AR--------L---------------------KN----VVGRSG---VTV-----NGIALHHASD------T--------LLQ--VA--GSSIIVSST
   WD 2   58-102    ASH-----DRFE---------------------GH----LISQTK---QQF-----TCVAVTSCGK------Y--------AAT--GETGHQPAVRLWQ
   WD 3  112-152    -GR--------L---------------------VR----SMQSHT---VSI-----TIVRFTPDDS------T--------LISIGCQ--HDAQIFTWD
   WD 4  155-192    -TG--------H---------------------DL----GVGKLM---SPV-----NALTISFDSS------M--------CVT--VG---SKSVKYWF
   WD 5  197-235    -SD--------G---------------------MN----KRTGLT---SRS-----AILADKRNVN------F--------VDA--AF--CDSTNRMVT
   WD 6  258-301    KNF--------F---------------------VQYVKCYTWKES---GDF-----KAICIARVPE------G--------LLV--GC--SDGLVRLFC
   WD 7  304-369    GDD--------LDFLADLAPPTHLFQDPSNVYDPQ----QLQNHP---EDAIFPEPRCLVASSSSP------T--------FVV--GY--ADRSLIEFA
   WD 8  375-419    -WS--------F---------------------RR----ASLGHT---GSV-----NCIEPFPSSSPCLPIGT--------LIT--GG--SDGTIRFWN
   WD 9  423-464    -DS--------E---------------------DK----KEIANILCPSLL-----KVIFLDENPD------L--------LVD--KR--NLESVGPSN
   WD10  465-500    ---------------------------------DE----NQSASS---SGV-----LCTRVSHDGR------M--------LIA--GT--ATGMLYIVD
   WD11  506-552    -TP--------I---------------------ID----VINAHD---HDV-----TSIDFSDHAS------TSSHDHPIFLAS--GG--RDRFVHVFR
   WD12  560-600    -FV--------H---------------------CA----VLDGHQ---SAI-----KSIKFASNNG----QLH--------LYT--AA--SDRSLIIWK
   WD13  601-648    LSSFSDQHCEFT---------------------RV----QMISVA---SSI-----GDMNFIKHVD------L--------FVV--AG--HDRMLRQFD
   WD14  659-695    -----------G---------------------TD----DDVAHS---GKI-----LKVAIDHSGS------Y--------AIS--VC--SDKFVYVTD
   WD15  699-737    -GV--------C---------------------LA----VLCGFG---APA-----TDATFSDDFK------N--------VIV--TT--SNGSIFIWQ

   WD40 Template    TGE--------C---------------------LR----TLSGHT---SGV-----TSVSFSPDGK------R--------LVS--GS--EDGTIKVWD