Accession: K02B12.3 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = K02B12.3 (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K02B12.3, Len=425):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTIFGGGQSKKAPLIGESGIPAYCLKTIGSRHILVAGGGGASKTGVLNEIQTHLFTTGSANQDVGFQSKCVGKFDTGSMA 80  
WD40-rpts              (_________________WD 1________________)                            (____

Query       81 TMNMDVACAFDEISAKYVIAAGQENLCALYMTRAFKLNEENECLSFEIQKVSQVRSDFHASNSYQKCVRFDKSSRGKIFA 160 
WD40-rpts      ___________WD 2_______________)                   (__________________WD 3_______

Query      161 TGGADGHIRIWNAQIVFRAENEDAQPILTIQAHKADVDDIDFSKDSKTIISVGAEGAFIWSTQTGARLLDLQFPIEISRG 240 
WD40-rpts      ___________)           (________________WD 4________________)   (_______________

Query      241 FKMRSIRCTPLGKASNNTVFVAAYNSISKGSKDQASFLSLWAFNSERNVARPVVTKLLAKGQSISSLAVSDCGNFTAVGT 320 
WD40-rpts      ___________WD 5__________________________)(_____________________WD 6____________

Query      321 MSGSVLVFDTHECRRLYFSPESHGLFVTGIEFVSRTSPSICEDIQSETPGIASGFQSAVVTLAADKTMQLHRVPYPQPQP 400 
WD40-rpts      ________)(___________________WD 7__________________)                            

Query      401 FSEYLLIISLVCLIFTWLSSFFIVS 425 
WD40-rpts

7 WD40-repeats found in QUERY=K02B12.3 (Len=425):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-47       3.14  244.57  0.03106        7.5%     22.59
  WD 2:  Seg  6    76-111      6.08  365.78  0.00073       10.0%     35.96
  WD 3:  Seg 10   131-172      8.56  468.23  3.0e-05       27.5%     55.39
  WD 4:  Seg 14   184-221      7.52  425.32  0.00012       25.0%     51.36
  WD 5:  Seg 18   225-282      4.15  286.20  0.00862       27.5%     45.45
  WD 6:  Seg 22   283-329      8.11  449.46  5.4e-05       20.0%     55.97
  WD 7:  Seg 26   330-372      6.98  402.90  0.00023       20.0%     35.82

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-47     -SK-------KAP---LIG-----ESGIPAYCLKT--IGSRHI------------LVAGGGGAS--KTGVL
   WD 2   76-111    TG--------------SMA-----TMNMDVACAFD--EISAKY------------VIAAGQENL--CALYM
   WD 3  131-172    VSQ-------VRS---DFH-----ASNSYQKCVRFDKSSRGKI------------FATGGADGH--IRIWN
   WD 4  184-221    -AQ-------PIL---TIQ-----AHKADVDDIDF--SKDSKT------------IISVGAEGA--F-IWS
   WD 5  225-282    -GA-------RLL---DLQFPIEISRGFKMRSIRC--TPLGKASNNTVFVAAYNSISKGSKDQASFLSLWA
   WD 6  283-329    FNSERNVARPVVT---KLL-----AKGQSISSLAV--SDCGNF------------TAVGTMSGS--VLVFD
   WD 7  330-372    THE-------CRRLYFSPE-----SHGLFVTGIEF--VSRTSP------------SICEDIQSE--TPGIA

   WD40 Template    TGE-------CLR---TLS-----GHTSGVTSVSF--SPDGKR------------LVSGSEDGT--IKVWD