Input parameters:

  Query = K04D7.1 (Len=325)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K04D7.1, Len=325):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVQEQMKLTGTLEGHTGWVTQIATYTRNDKTTVLSSSRDKTILVWDVDSVAPVDEGPIGRPVRSLTGHNHFVSDVVISSD 80  
WD40-rpts          (__________________WD 1__________________)            (_________________WD 2

Query       81 GQFALSGSWDKTLRLWDLNQGVSTRQFISHTKDVLSVAFSADNRQIVSGSRDKSIKLWNTLAQCKYTITDDCHTDWVSTV 160 
WD40-rpts      ________________)   (_________________WD 3________________)    (________________

Query      161 RFSPSNRDPVIVSAGWDKVVKVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGND 240 
WD40-rpts      __WD 4_________________)(__________________WD 5__________________)   (__________

Query      241 VINAMSFSPNRYWLCAAVGSSIKIWDLEDKKEIEELKPEIASSGSSRGSSPQCISLAWSQDGQTLFAGYTDNIIRVYQVS 320 
WD40-rpts      ______WD 6_______________)(_______________________WD 7_______________________)  

Query      321 IRASN 325 
WD40-rpts           

7 WD40-repeats found in QUERY=K04D7.1 (Len=325):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-46       8.89  481.86  2.0e-05       40.0%     56.88
  WD 2:  Seg  5    59-97       9.89  523.28  5.5e-06       42.5%     56.54
  WD 3:  Seg  9   101-139     10.56  550.88  2.3e-06       45.0%     56.28
  WD 4:  Seg 13   144-184      8.47  464.55  3.4e-05       35.0%     56.64
  WD 5:  Seg 17   185-226      9.97  526.40  5.0e-06       42.5%     53.39
  WD 6:  Seg 21   230-266      6.50  383.25  0.00043       35.0%     54.47
  WD 7:  Seg 25   267-318      7.53  425.68  0.00011       25.0%     40.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-46     QMK------------L--TGTLEGHTGWVTQIATYTRNDKT--TVLSSSRDKTILVWD
   WD 2   59-97     -GR------------P--VRSLTGHNHFVSDVVISS--DGQ--FALSGSWDKTLRLWD
   WD 3  101-139    -GV------------S--TRQFISHTKDVLSVAFSA--DNR--QIVSGSRDKSIKLWN
   WD 4  144-184    -CK------------Y--TITDDCHTDWVSTVRFSP--SNRDPVIVSAGWDKVVKVWN
   WD 5  185-226    LGN------------CRLKTNHIGHTGYVNTVTVSP--DGS--LCASGGKDGQAMLWD
   WD 6  230-266    -GK------------H--LYTLPGN-DVINAMSFSP--NRY--WLCAAV-GSSIKIWD
   WD 7  267-318    LEDKKEIEELKPEIAS--SGSSRGSSPQCISLAWSQ--DGQ--TLFAGYTDNIIRVYQ

   WD40 Template    TGE------------C--LRTLSGHTSGVTSVSFSP--DGK--RLVSGSEDGTIKVWD