Input parameters:

  Query = K06A1.5 (Len=534)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K06A1.5, Len=534):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTDNRTSFRLEILNRLCKRERQQRCVKDMFKNYSLLDEQLQQSHRSRSVSVNDEHFKGNVNDRLAVMKEEMANVYRMKSK 80  
WD40-rpts                                                                                      

Query       81 NDQDLIDANRKLADSESRYSLVSSQRDKLRIETDAIVKKMTVLENELAELKEENSVINTERVSLVATCNYLTEKKTQLDN 160 
WD40-rpts                                                                                      

Query      161 ERFQLLNRIRELQEKSAEFMNAEIALQEERAQMRIREQIAKATADLNLGDERASSAFGTSPETLDEFMMTDVLPSEVKFK 240 
WD40-rpts                                                                                (_____

Query      241 LSTHDGEVHDVEWMSDDTFATAGSDSKVQIWRVSPNKTDASKVSTLSGCLGPVNRLDYDSQRHVCLASSNDKTCRLWNID 320 
WD40-rpts      ___________WD 1________________)       (_________________WD 2________________)  

Query      321 SQRLLSTFSGHTDKVSSARLFQSHNVISGSADRTIKNWDISSIRCLKSYLVGSTVFDIVAKCGVSQSSFISSHFDKKVRF 400 
WD40-rpts       (________________WD 3________________)(___________________WD 4_________________

Query      401 WDARSSDATYSVELGQKVSSLDISMDGLQVLASSRDDTLSLIDVRNYGIIHLYSAEQYKTSCDSTRAIFSSTGEYVLAGS 480 
WD40-rpts      _)(__________________WD 5_________________)   (___________________WD 6__________

Query      481 SNSSVFIWNTKTTKLEKVVKTARSDSAQIMSLAWNPSGRGLLACDRQKTCTLWR 534 
WD40-rpts      ________)      (_________________WD 7________________)

7 WD40-repeats found in QUERY=K06A1.5 (Len=534):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   235-272      7.26  414.36  0.00016       22.5%     50.69
  WD 2:  Seg  5   280-318      8.83  479.22  2.2e-05       22.5%     46.64
  WD 3:  Seg  8   322-359      8.89  481.71  2.0e-05       42.5%     48.61
  WD 4:  Seg 12   360-402      7.77  435.62  8.4e-05       17.5%     53.54
  WD 5:  Seg 16   403-443      7.47  423.38  0.00012       27.5%     50.66
  WD 6:  Seg 20   447-489      7.66  430.95  9.7e-05       20.0%     51.29
  WD 7:  Seg 23   496-534      7.84  438.71  7.6e-05       17.5%     41.34

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  235-272    -SE---VKFKLST-HDGEV----HDVEWMSDDT-FATAGSDSKVQIWR
   WD 2  280-318    -AS---KVSTLSG-CLGPV----NRLDYDSQRHVCLASSNDKTCRLWN
   WD 3  322-359    -QR---LLSTFSG-HTDKV----SSARLFQSHN-VISGSADRTIKNWD
   WD 4  360-402    ISSIRCLKSYLVG-STVFD----IVAKCGVSQSSFISSHFDKKVRFWD
   WD 5  403-443    ARS---SDATYSVELGQKV----SSLDISMDGLQVLASSRDDTLSLID
   WD 6  447-489    -YG---IIHLYSA-EQYKTSCDSTRAIFSSTGEYVLAGSSNSSVFIWN
   WD 7  496-534    -EK---VVKTARS-DSAQI----MSLAWNPSGRGLLACDRQKTCTLWR

   WD40 Template    TGE---CLRTLSG-HTSGV----TSVSFSPDGKRLVSGSEDGTIKVWD