Input parameters:

  Query = K06A5.8b (Len=942)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K06A5.8b, Len=942):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNRIPSALTTSVKSPKTPSGIPFLIRERDVIKAILEFLEIRGLHITQLSLEREAGVINGAFSDDLLFLRQLILDGQWDN 80  
WD40-rpts                                                                                      

Query       81 ALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCVKLEPGPLHDNDFAVEELVECLKDLEHICPTPEDYRHLCALLTLPKL 160 
WD40-rpts                                                                                      

Query      161 SDHEDFKNWNPSSARVECFNKVNQLCGHLLPPTGKEKDRGDDANSSNDRLTGLITKGRFYEGCVDYCQAQAIGDKRGIDA 240 
WD40-rpts                                                                                      

Query      241 GPMPSEMLTFRPKLGSADLSLVCWLEMVGKEQFSMPFKQKQLELKVDHIRKPKLEAPWTETIMATPIKPGGQFPHNLVPS 320 
WD40-rpts                                                                                      

Query      321 SKLKFAEKMSQSMTMSMLPPADLTTSMFPSVPRGHPMSQSTAAGFCLGTAITEADAMAQSLLIDEMMESSQLARTSRPDT 400 
WD40-rpts                                                                                      

Query      401 LRGVGMMMTGDTIVPVQPAQVMINAPSQLSSQMMSMSMAPQVMAPIAPMAQNMINYDFAPVRRQLDEMARRSLPPSRLPT 480 
WD40-rpts                                                                                      

Query      481 VPELGSPAVNSHHEENLMTQSRLFQQFSAAKQINEMVLPRGVGGVVGAAGAVGGAHVLPLQSQERLFQQRVAAAPGFQNG 560 
WD40-rpts                                                                                      

Query      561 AQIPNQSMVPQGVPMSHQIRPQSIAGLPQAQPQVPQQLQRPVSAPTGMGVQFVPVCRYEDSQAIRATGFHPSGRYFALGT 640 
WD40-rpts                                               (_____________________WD 1_____________

Query      641 NSKQLHICLYPDTKRTQSRPMAYEQTKNAEIAVTRPKQHRGSVYCLSFNPNGDLLATGSNDKTIRLMAFNEDSCRIGAEM 720 
WD40-rpts      ________)                    (_________________WD 2________________)(___________

Query      721 ELTCHDGTVRDLIFIESSINRSTILVSGGAGNCHLNVTDCNTGQLIQSMKGHTAPILGLYTWSQAGNQFVSCSQDKTIRF 800 
WD40-rpts      ____________WD 3______________________)   (_________________WD 4________________

Query      801 WDLRQQTAVNVISPGSNKSHNASPVTSVCVDPNGKLLVSGHEDASVALFDIGGNRILQTFRPHGDEVRTVRFSNAAYYLL 880 
WD40-rpts      _)          (________________WD 5________________)   (_________________WD 6_____

Query      881 TASYDKRVVISDMRGDLMAPLMYLPVAEHSDKVVQCRWHPHDFSFLSTSADRSAVLWSLPNR 942 
WD40-rpts      ___________)       (_________________WD 7________________)    

7 WD40-repeats found in QUERY=K06A5.8b (Len=942):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   602-649      6.34  376.55  0.00052       10.0%     53.00
  WD 2:  Seg 14   670-708      7.51  424.97  0.00012       30.0%     43.81
  WD 3:  Seg 17   709-759      5.35  335.82  0.00185       20.0%     48.65
  WD 4:  Seg 21   763-802      9.04  488.13  1.6e-05       35.0%     51.82
  WD 5:  Seg 26   813-850      8.94  484.09  1.9e-05       40.0%     41.34
  WD 6:  Seg 29   854-892      8.87  481.07  2.0e-05       27.5%     55.34
  WD 7:  Seg 32   900-938      6.91  400.00  0.00025       17.5%     44.57

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  602-649    VSAPTGMGVQFVPVCRYEDSQAIRAT-GF-----HPSGRYFALGTNSKQLHICL
   WD 2  670-708    -EI--------AVTRPKQHRGSVYCL-SF-----NPNGDLLATGSNDKTIRLMA
   WD 3  709-759    FNE--DSCRIGAEMELTCHDGTVRDL-IFIESSINRSTILVSGGAGNCHLNVTD
   WD 4  763-802    -GQ--------LIQSMKGHTAPILGLYTW-----SQAGNQFVSCSQDKTIRFWD
   WD 5  813-850    SPG----------SNKSHNASPVTSV-CV-----DPNGKLLVSGHEDASVALFD
   WD 6  854-892    -NR--------ILQTFRPHGDEVRTV-RF-----SNAAYYLLTASYDKRVVISD
   WD 7  900-938    -PL--------MYLPVAEHSDKVVQC-RW-----HPHDFSFLSTSADRSAVLWS

   WD40 Template    TGE--------CLRTLSGHTSGVTSV-SF-----SPDGKRLVSGSEDGTIKVWD