Input parameters:

  Query = K06A5.8d (Len=559)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K06A5.8d, Len=559):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVGKEQFSMPFKQKQLELKVDHIRKPKLEAPWTETIMATPIKPGGQFPHNLVPSSKLKFAEKMSQSMTMSMLPPADLTTS 80  
WD40-rpts                            (_____________________WD 1____________________)           

Query       81 MFPSVPRGHPMSQSTAAGFCLGTAITEADAMAQSLLIDEMMESSQLARTSRPDTLRGVGMMMTGDTIVPVQPAQVMINAP 160 
WD40-rpts                                                                           (__________

Query      161 SQLSSQMMSMSMAPQVMAPIAPMAQNMINYDFAPVRRQLDEMARRSLPPSRLPTVPELGSPAVNSHHEENLMTQSRLFQQ 240 
WD40-rpts      _________WD 2__________________)                                                

Query      241 FSAAKQINEMVLPRGVGGVVGAAGAVGGAHVLPLQSQERLFQQRVAAAPGFQNGAQIPNQSMVPQGVPMSHQIRPQSIAG 320 
WD40-rpts                          (_________________WD 3________________)                     

Query      321 LPQAQPQVPQQLQRPVSAPTGMGVQFVPVCRYEDSQAIRATGFHPSGRYFALGTNSKQLHICLYPDTKRTQSRPMAYEQT 400 
WD40-rpts                     (_____________________WD 4_____________________)                 

Query      401 KNAEIAVTRPKQHRGSVYCLSFNPNGDLLATGSNDKTIRLMAFNEDSCRIGAEMELTCHDGTVRDLIFIESSINRSTILV 480 
WD40-rpts         (_________________WD 5________________)            (_________________WD 6____

Query      481 SGGAGNCHLNVTDCNTGQLIQSMKGHTAPILGLYTWSQAGNQFVSCSQDKTIRFWDLRQQTAVNVISPGSNKSHSEFFN 559 
WD40-rpts      ____________)   (_________________WD 7_________________)                       

7 WD40-repeats found in QUERY=K06A5.8d (Len=559):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    23-69       3.60  263.33  0.01746        7.5%      3.20
  WD 2:  Seg  3   150-192      3.87  274.55  0.01236       10.0%      5.63
  WD 3:  Seg  9   261-299      4.86  315.28  0.00350        7.5%     17.53
  WD 4:  Seg 15   336-383      7.38  419.46  0.00014       10.0%     47.57
  WD 5:  Seg 19   404-442      8.22  454.39  4.7e-05       30.0%     42.49
  WD 6:  Seg 22   455-493      5.90  358.27  0.00092       17.5%     44.66
  WD 7:  Seg 25   497-536      9.11  491.11  1.5e-05       35.0%     50.89

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-69     -IR--------KPKLEAPWTETI------MAT-PI-----KPGGQFPHNLVPSSKLKFAEKMSQSMTM
   WD 2  150-192    VQP--------AQVMINAPS---QLSSQMMSM-SM-----APQVMAPIAPMAQN--------MINYDF
   WD 3  261-299    -GA--------AGAVGGAHVLPL------QSQ-ER-----LFQQRVAAAPGFQN--------GAQIPN
   WD 4  336-383    VSAPTGMGVQFVPVCRYEDSQAI------RAT-GF-----HPSGRYFALGTNSK--------QLHICL
   WD 5  404-442    -EI--------AVTRPKQHRGSV------YCL-SF-----NPNGDLLATGSNDK--------TIRLMA
   WD 6  455-493    --------------ELTCHDGTV------RDL-IFIESSINRSTILVSGGAGNC--------HLNVTD
   WD 7  497-536    -GQ--------LIQSMKGHTAPI------LGLYTW-----SQAGNQFVSCSQDK--------TIRFWD

   WD40 Template    TGE--------CLRTLSGHTSGV------TSV-SF-----SPDGKRLVSGSEDG--------TIKVWD