Input parameters:

  Query = K07C5.8 (Len=678)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (K07C5.8, Len=678):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDASQLSNSQNDKAKDETTRPQYTMSGILHFIQHEWTKNELDRTRWEAERAEMQARIAFLQGERKGQENLKQDLVRRIK 80  
WD40-rpts                                                                                      

Query       81 MLEFCLKQERAKNYRLTHNGEEPPSLEESPNENSAPSENSHLTADLDAYINDAGEAGGSFRQGRLLLKRYLEEIGYSEHI 160 
WD40-rpts                                                                                      

Query      161 MDVRSFRVKNLLGLLPQADLPSSERLNGRKEKSDSDSDDGHDDAALDADASKAFEEFDFLNNMDAKEKGSDDDWAGKGAS 240 
WD40-rpts                                                                                      

Query      241 FEKLIKQYKDDPKVKRRSRTSTEESEEKTSNDVQKNLETDVPPGIRSAIDAAAQEELPVRRQGRRSANFGYGNGNELDVA 320 
WD40-rpts                                                                                      

Query      321 LGMQDNDNMDIKDEFKDEDDDPNAQQVKWNIKVTLRSHLDSIRAMQFHPVEPVLFTASEDGLIKLWNLDQKKDEKHNSGG 400 
WD40-rpts                                        (______________WD 1_____________)             

Query      401 TELEPVYTFRGHKGPVLCLVLSPTGDHLYTGGIDGNICCFNVPSSNGDPFDSYDPRVLTETLTGHTDAIWSVAYHSSNSR 480 
WD40-rpts            (_______________WD 2______________)              (_________________WD 3___

Query      481 LVSASSDSTVRLWEPGNGEPLIRTIGAPKSGILPTSVDFVSTETSHLLAAYTNCYAQIIDIDTGSTVMVFDFGAVTGSPT 560 
WD40-rpts      _____________)(____________________WD 4____________________)   (________________

Query      561 MNKIVSHPTMPLTLIGGEDRTIRYFDNTNGSIIHEAIAHVEGVSSLAIDPNGLYLLSGSHDGSIRMWNMEKRSCLQEISA 640 
WD40-rpts      ___WD 5__________________)   (_________________WD 6________________)   (________

Query      641 HRKKNDSAVTSVAFHPSRSLIGSAGADSLAKVYVSGSN 678 
WD40-rpts      ___________WD 7__________________)    

7 WD40-repeats found in QUERY=K07C5.8 (Len=678):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   355-387      8.28  456.60  4.4e-05       30.0%     46.30
  WD 2:  Seg  7   407-441      8.48  464.93  3.4e-05       30.0%     48.00
  WD 3:  Seg 10   456-494      9.34  500.53  1.1e-05       37.5%     45.07
  WD 4:  Seg 13   495-540      6.67  390.02  0.00034       22.5%     45.52
  WD 5:  Seg 17   544-586      7.05  406.05  0.00021       20.0%     56.45
  WD 6:  Seg 21   590-628     10.50  548.48  2.5e-06       37.5%     56.06
  WD 7:  Seg 25   632-674      8.03  446.54  6.0e-05       37.5%     56.70

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  355-387    ----------LR----SHL----DSIRAMQ---FHPVEPVLFTASEDGLIKLWN
   WD 2  407-441    --------YTFR----GHK----GPVLCLV---LSPTGDHLYTGGIDGNICCFN
   WD 3  456-494    -RV---LTETLT----GHT----DAIWSVA---YHSSNSRLVSASSDSTVRLWE
   WD 4  495-540    PGNGEPLIRTIG----APK----SGILPTSVDFVSTETSHLLAAYTNCYAQIID
   WD 5  544-586    -GS---TVMVFDFGAVTGS----PTMNKIV---SHPTMPLTLIGGEDRTIRYFD
   WD 6  590-628    -GS---IIHEAI----AHV----EGVSSLA---IDPNGLYLLSGSHDGSIRMWN
   WD 7  632-674    -RS---CLQEIS----AHRKKNDSAVTSVA---FHPSRSLIGSAGADSLAKVYV

   WD40 Template    TGE---CLRTLS----GHT----SGVTSVS---FSPDGKRLVSGSEDGTIKVWD