Input parameters:

  Query = M01A10.2c (Len=1211)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (M01A10.2c, Len=1211):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRILVVRHGLPEDPRCFAYDPVQRLIAIGTGRGHIRIIGDAGVDYLLKHESGEPVLHMQFLVNEGGLITSCGTDSIHLWN 80  
WD40-rpts      (_________________WD 1________________)  (_________________WD 2________________)

Query       81 YRQKTAEIVHTVQLSKESVSCIHLPVAGKWLFIGTDKGNVYFLCLNSFLLSPYVINWNKAIDLSCRVHPGPVRQLAVSPA 160 
WD40-rpts           (_________________WD 3________________)              (_________________WD 4

Query      161 ENTKLLIVYDKGIVVQWNLGTREVDRYPLDPPIKSVNWHFDGRQILTGNVDGSISLYNHKKSTEAIQRTTPHGSGPCRPI 240 
WD40-rpts      _________________)(_________________WD 5_________________)                      

Query      241 QQVEWKHMSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFM 320 
WD40-rpts                                                   (_________________WD 6_____________

Query      321 VLDLNQNGHPVIESPHAMNIHESPVTCMAYYSDCPLDLIGALTLVGTKQRNKEFSARSWPVTGGLGRECATGHQELVVTG 400 
WD40-rpts      ____)                                        (____________________WD 7__________

Query      401 HKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVKYIELCLESRQLLVAGISGQVTLFRFTKQEICGTIA 480 
WD40-rpts      _________)             (____________________WD 8____________________)           

Query      481 VVNIPLLGNLSSNLPNNDFDKSPVPNGPGKEIRRQRKIVSRESTNSLDTSDSGDERIVPFKVRGAPVKRPPGFVPELACF 560 
WD40-rpts                                                                                      

Query      561 VPWHSHAKVDQITTICLNSSYGIIAIGTSSGLALVDTTQCALIYSWTTNELYGSDPTPAIQLSMQLSDAASPLEIDEFEN 640 
WD40-rpts      (________________WD 9_______________)                                           

Query      641 DDTLIYNTDTGNYTLRSTRNSLTPSSNGFLHPGEMPTRPKSAANSSNKSGGMMGLFRRNTAELAATIRERYQGNRSESAT 720 
WD40-rpts                                                                                      

Query      721 TDRPDVEHRGETPPPTPNEGNKVQKAGRSHSVKGSFIRRFAKSSSSKEKKEVKIEVDNQSNSGIERSRSFHSHISEEGDS 800 
WD40-rpts                                                                                      

Query      801 QRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWVGTSAGASLALNLILPEDRFTST 880 
WD40-rpts                                                                                      

Query      881 IVVAPSGTVVRLKGQVISQSFMDNTFCIISPASESYKEAAKEQSATSPDRSLLNRVNTKASLAPQYSSSIDSNDEISQIL 960 
WD40-rpts                                                                                      

Query      961 IVAAENEVKVVALPTFSQLYVQKFDEIPLVKATPTHIRGYPCLMCLSAAGQIIMLSLPSLRILQTSTIFPHSVEIDDPLC 1040
WD40-rpts                                                                                      

Query     1041 QKTAFSDHGLGVYMASQTEMEKYTMCSEIAEQTGESLGELFVPCEMPEQPKNNSFLKGVSSIFGGTPRNDPNDIDAILSE 1120
WD40-rpts                                                                                      

Query     1121 NMGVKNSSGVNPMRSVARTIPGPSVQMDRAQAGGVSAGQAAAMALQNLNERTEKLNATVDATENLKNNAMSLSSRTGKLV 1200
WD40-rpts                                                                                      

Query     1201 EKYEKKKWYNF 1211
WD40-rpts                 

9 WD40-repeats found in QUERY=M01A10.2c (Len=1211):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       5.76  352.61  0.00110       15.0%     51.86
  WD 2:  Seg  5    42-80       5.88  357.63  0.00094       15.0%     58.23
  WD 3:  Seg  9    86-124      6.14  368.22  0.00068       20.0%     57.78
  WD 4:  Seg 13   139-178      4.89  316.85  0.00334       17.5%     48.53
  WD 5:  Seg 16   179-218      7.10  408.14  0.00020       22.5%     52.09
  WD 6:  Seg 25   286-325      3.39  254.62  0.02282        5.0%     21.72
  WD 7:  Seg 30   366-410      4.74  310.56  0.00406       20.0%     25.29
  WD 8:  Seg 33   424-469      3.96  278.10  0.01108       12.5%     42.76
  WD 9:  Seg 39   561-597      2.88  233.47  0.04356       10.0%     36.87

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -M------RILVVRHG-----LPEDPRCFAYDP-VQRLIAIGTGRGHIRIIG
   WD 2   42-80     -G------VDYLLKHE-----SGEPVLHMQFLV-NEGGLITSCGTDSIHLWN
   WD 3   86-124    -A------EIVHTVQL-----SKESVSCIHLPV-AGKWLFIGTDKGNVYFLC
   WD 4  139-178    -K------AIDLSCRV-----HPGPVRQLAVSPAENTKLLIVYDKGIVVQWN
   WD 5  179-218    LG------TREVDRYP-----LDPPIKSVNWHF-DGRQILTGNVDGSISLYN
   WD 6  286-325    MD------WPIIQFIP-----LNQNIWNSIPQC-PHSVAVLLKHDFMVLDLN
   WD 7  366-410    GT------KQRNKEFSARSWPVTGGLGRECATG-HQELVVTGHKDGSLKFWQ
   WD 8  424-469    SSSHFERLEEMETSDK-----VSHAVKYIELCL-ESRQLLVAGISGQVTLFR
   WD 9  561-597    ---------VPWHSHA-----KVDQITTICLNS-SYGIIAIGTSSGLALVDT

   WD40 Template    TG------ECLRTLSG-----HTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD