Input parameters:

  Query = M01A10.2e (Len=1128)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (M01A10.2e, Len=1128):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRAKKKFASAIDGLRSLHNRTEINVDEKIQSEHCRFTRVVRHGLPEDPRCFAYDPVQRLIAIGTGRGHIRIIGDAGVDY 80  
WD40-rpts                                    (___________________WD 1___________________)  (___

Query       81 LLKHESGEPVLHMQFLVNEGGLITSCGTDSIHLWNYRQKTAEIVHTVQLSKESVSCIHLPVAGKWLFIGTDKGNVYFLCL 160 
WD40-rpts      ______________WD 2________________)     (_________________WD 3________________) 

Query      161 NSFLLSPYVINWNKAIDLSCRVHPGPVRQLAVSPAENTKLLIVYDKGIVVQWNLGTREVDRYPLDPPIKSVNWHFDGRQI 240 
WD40-rpts                   (_________________WD 4_________________)(_________________WD 5_____

Query      241 LTGNVDGSISLYNHKKSTEAIQRTTPHGSGPCRPIQQVEWKHMSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLE 320 
WD40-rpts      ____________)                                                                   

Query      321 MDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQNGHPVIESPHAMNIHESPVTCMAYYSDCPLDLIGALTLV 400 
WD40-rpts                                                                                      

Query      401 GTKQRNKEFSARSWPVTGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 480 
WD40-rpts      (____________________WD 6___________________)             (____________________W

Query      481 YIELCLESRQLLVAGISGQVTLFRFTKQEICGTIAVVNIPLLGNLSSNLPNNDFDKSPVPNGPGKEIRRQRKIVSRESTN 560 
WD40-rpts      D 7____________________)                                                        

Query      561 SLDTSDSGDERIVPFKVRGAPVKRPPGFVPELACFVPWHSHAKVDQITTICLNSSYGIIAIGTSSGLALVDTTQCALIYS 640 
WD40-rpts                                                                                      

Query      641 WTTNELYGSDPTPAIQLSMQLSDAASPLESPISLEAPKRIISEQKQRSFDARRPQLFKTQSVVENGSLSRGDSQRESPSS 720 
WD40-rpts                                                                                      

Query      721 GRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWVGTSAGASLALNLILPEDRFTSTIVVAPSA 800 
WD40-rpts                                                                                      

Query      801 VEECTVVRLKGQVISQSFMDNTFCIISPASESYKEAAKEQSATSPDRSLLNRVNTKASLAPQYSSSIDSNDEISQILIVA 880 
WD40-rpts                                                                                      

Query      881 AENEVKVVALPTFSQLYVQKFDEIPLVKATPTHIRGYPCLMCLSAAGQIIMLSLPSLRILQTSTIFPHSVEIDDPLCQKT 960 
WD40-rpts                                                                                      

Query      961 AFSDHGLGVYMASQTEMEKYTMCSEIAEQTGESLGELFVPCEMPEQPKNNSFLKGVSSIFGGTPRNDPNDIDAILSENMG 1040
WD40-rpts                                                                                      

Query     1041 VKNSSGVNPMRSVARTIPGPSVQMDRAQAGGVSAGQAAAMALQNLNERTEKLNATVDATENLKNNAMSLSSRTGKLVEKY 1120
WD40-rpts                                                                                      

Query     1121 EKKKWYNF 1128
WD40-rpts              

7 WD40-repeats found in QUERY=M01A10.2e (Len=1128):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    31-74       4.99  320.69  0.00296       17.5%     43.86
  WD 2:  Seg  5    77-115      5.56  344.36  0.00142       15.0%     57.75
  WD 3:  Seg  9   121-159      5.77  353.17  0.00108       20.0%     57.95
  WD 4:  Seg 14   174-213      4.50  300.46  0.00555       17.5%     48.40
  WD 5:  Seg 17   214-253      6.65  389.56  0.00035       22.5%     52.34
  WD 6:  Seg 31   401-445      4.44  297.91  0.00600       22.5%     24.46
  WD 7:  Seg 34   459-504      3.24  248.33  0.02768       12.5%     41.94

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-74     QS------EHCRFTRVVRHGLPEDPRCFAYDP-VQRLIAIGTGRGHIRIIG
   WD 2   77-115    -G------VDYL----LKHESGEPVLHMQFLV-NEGGLITSCGTDSIHLWN
   WD 3  121-159    -A------EIVH----TVQLSKESVSCIHLPV-AGKWLFIGTDKGNVYFLC
   WD 4  174-213    -K------AIDL----SCRVHPGPVRQLAVSPAENTKLLIVYDKGIVVQWN
   WD 5  214-253    LG------TREV----DRYPLDPPIKSVNWHF-DGRQILTGNVDGSISLYN
   WD 6  401-445    GT-KQRNKEFSA----RSWPVTGGLGRECATG-HQELVVTGHKDGSLKFWQ
   WD 7  459-504    SSSHFERLEEME----TSDKVSHAVKYIELCL-ESRQLLVAGISGQVTLFR

   WD40 Template    TG------ECLR----TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD