Input parameters:

  Query = M01A10.2f (Len=1133)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (M01A10.2f, Len=1133):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDRAKKKFASAIDGLRSLHNRTEINVDEKIQSEHCRFTRVVRHGLPEDPRCFAYDPVQRLIAIGTGRGHIRIIGDAGVDY 80  
WD40-rpts                                   (____________________WD 1___________________)  (___

Query       81 LLKHESGEPVLHMQFLVNEGGLITSCGTDSIHLWNYRQKTAEIVHTVQLSKESVSCIHLPVAGKWLFIGTDKGNVYFLCL 160 
WD40-rpts      ______________WD 2________________)     (_________________WD 3________________) 

Query      161 NSFLLSPYVINWNKAIDLSCRVHPGPVRQLAVSPAENTKLLIVYDKGIVVQWNLGTREVDRYPLDPPIKSVNWHFDGRQI 240 
WD40-rpts                   (_________________WD 4_________________)(_________________WD 5_____

Query      241 LTGNVDGSISLYNHKKSTEAIQRTTPHGSGPCRPIQQVEWKHMSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLE 320 
WD40-rpts      ____________)                                                                   

Query      321 MDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQNGHPVIESPHAMNIHESPVTCMAYYSDCPLDLIGALTLV 400 
WD40-rpts                                                                                      

Query      401 GTKQRNKEFSARSWPVTGGLGRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 480 
WD40-rpts      (____________________WD 6___________________)             (____________________W

Query      481 YIELCLESRQLLVAGISGQVTLFRFTKQEICGTIAVVNIPLLGNLSSNLPNNDFDKSPVPNGPGKEIRRQRKIVSRESTN 560 
WD40-rpts      D 7____________________)                                                        

Query      561 SLDTSDSGDERIVPFKVRGAPVKRPPGFVPELACFVPWHSHAKVDQITTICLNSSYGIIAIGTSSGLALVDTTQCALIYS 640 
WD40-rpts                                                                                      

Query      641 WTTNELYGSDPTPAIQLSMQLSDAASPLESPISLEAPKRIISEQKQRSFDARRPQLFKTQSVVENGSLSRGDSQRESPSS 720 
WD40-rpts                                                                                      

Query      721 GRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWVGTSAGASLALNLILPEDRFTSTIVVAPSV 800 
WD40-rpts                                                                                      

Query      801 RGRKHCYYGTVVRLKGQVISQSFMDNTFCIISPASESYKEAAKEQSATSPDRSLLNRVNTKASLAPQYSSSIDSNDEISQ 880 
WD40-rpts                                                                                      

Query      881 ILIVAAENEVKVVALPTFSQLYVQKFDEIPLVKATPTHIRGYPCLMCLSAAGQIIMLSLPSLRILQTSTIFPHSVEIDDP 960 
WD40-rpts                                                                                      

Query      961 LCQKTAFSDHGLGVYMASQTEMEKYTMCSEIAEQTGESLGELFVPCEMPEQPKNNSFLKGVSSIFGGTPRNDPNDIDAIL 1040
WD40-rpts                                                                                      

Query     1041 SENMGVKNSSGVNPMRSVARTIPGPSVQMDRAQAGGVSAGQAAAMALQNLNERTEKLNATVDATENLKNNAMSLSSRTGK 1120
WD40-rpts                                                                                      

Query     1121 LVEKYEKKKWYNF 1133
WD40-rpts                   

7 WD40-repeats found in QUERY=M01A10.2f (Len=1133):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    30-74       4.63  305.75  0.00471       12.5%     40.96
  WD 2:  Seg  5    77-115      5.42  338.39  0.00171       15.0%     57.99
  WD 3:  Seg  9   121-159      5.62  346.75  0.00132       20.0%     57.85
  WD 4:  Seg 13   174-213      4.29  291.85  0.00724       17.5%     48.18
  WD 5:  Seg 16   214-253      6.85  397.42  0.00027       22.5%     52.52
  WD 6:  Seg 30   401-445      4.53  301.62  0.00535       20.0%     26.78
  WD 7:  Seg 33   459-504      3.92  276.48  0.01164       12.5%     42.81

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-74     IQ------SEHCRFTRVVRHG-----LPEDPRCFAYDP-VQRLIAIGTGRGHIRIIG
   WD 2   77-115    -G------VDYLLKH-----E-----SGEPVLHMQFLV-NEGGLITSCGTDSIHLWN
   WD 3  121-159    -A------EIVHTVQ-----L-----SKESVSCIHLPV-AGKWLFIGTDKGNVYFLC
   WD 4  174-213    -K------AIDLSCR-----V-----HPGPVRQLAVSPAENTKLLIVYDKGIVVQWN
   WD 5  214-253    LG------TREVDRY-----P-----LDPPIKSVNWHF-DGRQILTGNVDGSISLYN
   WD 6  401-445    GT------KQRNKEF-----SARSWPVTGGLGRECATG-HQELVVTGHKDGSLKFWQ
   WD 7  459-504    SSSHFERLEEMETSD-----K-----VSHAVKYIELCL-ESRQLLVAGISGQVTLFR

   WD40 Template    TG------ECLRTLS-----G-----HTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD