Input parameters:

  Query = R01H10.3a (Len=605)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R01H10.3a, Len=605):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQIVRQSKFRHVFCKPVKHESCMSDIRVTEITWDSLFCDVNPKFIAFINRGAGGPFMVIPVNKIGRVDKDYPFVDAHKA 80  
WD40-rpts                    (_____________________WD 1____________________)       (___________

Query       81 PCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAWHPVANNVLLTAGGENVMFMWNVG 160 
WD40-rpts      ______WD 2_________________)          (_________________WD 3_________________)  

Query      161 TGEALLEISGHPDQIWSINFNFDGSQFVTTCKDKKIRILDSHTGEVVHEGMGHEGVKPQRAIFVKDGLILSTGFTKRSER 240 
WD40-rpts       (_________________WD 4________________)   (_________________WD 5_______________

Query      241 LYALRAPEDLSTPIVEEELDTSNGVVFPFYDEDSGLVYLVGKGDCAIRYYEVNNDAPYVHYINTYTTNEPQRAVGFQSKR 320 
WD40-rpts      __) (_____________________WD 6____________________) (__________________WD 7_____

Query      321 GMSSEENEINRIYKLTTKGVVDILQFFVPRKSDLFQHDLYPDTRSTIPALTAEEFMEGKNAAPNRQPVNAAAAAAAAKPK 400 
WD40-rpts      _____________)                                                                  

Query      401 VQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRASRTEIPPK 480 
WD40-rpts                                                                                      

Query      481 EESKVDPMKPKQAVQLKSRAARDEPGGGAQTAGQRRAAAELERIKRDQSRTADEDNTLAPPPSSSRASASPRGSVSAASD 560 
WD40-rpts                                                                                      

Query      561 HVPQNMDELLEDLMKMKAVLRQHERRIRMLEEEIADRNMSNAYSF 605 
WD40-rpts                                                   

7 WD40-repeats found in QUERY=R01H10.3a (Len=605):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-61       3.28  250.04  0.02627       10.0%     42.28
  WD 2:  Seg  5    69-108      6.81  396.04  0.00029       30.0%     44.45
  WD 3:  Seg  9   119-158      6.82  396.22  0.00028       20.0%     52.01
  WD 4:  Seg 13   162-200      9.52  508.08  8.8e-06       35.0%     55.90
  WD 5:  Seg 17   204-243      5.49  341.58  0.00155       22.5%     54.55
  WD 6:  Seg 21   245-291      5.44  339.47  0.00166       15.0%     49.20
  WD 7:  Seg 25   293-334      5.75  352.03  0.00112       12.5%     36.86

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-61     CKP-------V--KHESCMSDIRVTEITW-DSLFCDVNP-KFIAFINRGAGGPFMVIP
   WD 2   69-108    -DK-------D--YP-------FVDAHKA-PCLEVAWSPFNDNVIASCSEDTTCKVWV
   WD 3  119-158    -SE-------P--AV-------ELTGHQK-RVNTIAWHPVANNVLLTAGGENVMFMWN
   WD 4  162-200    -GE-------A--LL-------EISGHPD-QIWSINFNF-DGSQFVTTCKDKKIRILD
   WD 5  204-243    -GE-------V--VH-------EGMGHEGVKPQRAIFVK-DGLILSTGFTKRSERLYA
   WD 6  245-291    RAPEDLSTPIV--EE-------ELDTSNG-VVFPFYDED-SGLVYLVGKGDCAIRYYE
   WD 7  293-334    NND-------APYVH-------YINTYTT-NEPQRAVGF-QSKRGMSSEENEINRIYK

   WD40 Template    TGE-------C--LR-------TLSGHTS-GVTSVSFSP-DGKRLVSGSEDGTIKVWD