Input parameters:

  Query = R01H10.3c (Len=607)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R01H10.3c, Len=607):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQIVRQSKFRHVFCKPVKHESCMSDIRVTEITWDSLFCDVNPKFIAFINRGAGGPFMVIPVNKIGRVDKDYPFVDAHKA 80  
WD40-rpts                    (_____________________WD 1____________________)       (___________

Query       81 PCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAWHPVANNVLLTAGGENVMFMWNVG 160 
WD40-rpts      ______WD 2_________________)          (_________________WD 3_________________)  

Query      161 TGEALLEISGHPDQIWSINFNFDGSQFVTTCKDKKIRILDSHTGEVVHEGMGHEGVKPQRAIFVKDGLILSTGFTKRSER 240 
WD40-rpts       (_________________WD 4________________)   (_________________WD 5_______________

Query      241 LYALRAPEDLSTPIVEEELDTSNGVVFPFYDEDSGLVYLVGKGDCAIRYYEVNNDAPYVHYINTYTTNEPQRAVGFQSKR 320 
WD40-rpts      __) (_____________________WD 6____________________) (__________________WD 7_____

Query      321 GMSSEENEINRIYKLTTKGVVDILQFFVPRKSDLFQHDLYPDTRSTIPALTAEEFMEGKNAAPNRQPVNAAAAAAAAKPK 400 
WD40-rpts      _____________)                                                                  

Query      401 VQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRASRTEIPPK 480 
WD40-rpts                                                                                      

Query      481 EESKVDPMKPKQAVQLKSRAARDEPGGGAQTAGQRRAAAELERIKRDQSRTADEDNTLAPPPSSSRASASPRGSVSAASD 560 
WD40-rpts                                                                                      

Query      561 VGHVPQNMDELLEDLMKMKAVLRQHERRIRMLEEEIADRNMSNAYSF 607 
WD40-rpts                                                     

7 WD40-repeats found in QUERY=R01H10.3c (Len=607):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-61       3.27  249.77  0.02648       10.0%     42.99
  WD 2:  Seg  6    69-108      7.20  411.91  0.00017       30.0%     43.30
  WD 3:  Seg  9   119-158      6.78  394.58  0.00030       20.0%     51.78
  WD 4:  Seg 13   162-200      9.50  507.10  9.1e-06       35.0%     55.96
  WD 5:  Seg 17   204-243      5.45  339.65  0.00165       22.5%     54.49
  WD 6:  Seg 21   245-291      5.40  337.72  0.00175       15.0%     48.92
  WD 7:  Seg 25   293-334      5.59  345.67  0.00137       12.5%     37.06

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-61     CKP-------V--KHESCMSDIRVTEITW-DSLFCDVNP-KFIAFINRGAGGPFMVIP
   WD 2   69-108    -DK-------D--YP-------FVDAHKA-PCLEVAWSPFNDNVIASCSEDTTCKVWV
   WD 3  119-158    -SE-------P--AV-------ELTGHQK-RVNTIAWHPVANNVLLTAGGENVMFMWN
   WD 4  162-200    -GE-------A--LL-------EISGHPD-QIWSINFNF-DGSQFVTTCKDKKIRILD
   WD 5  204-243    -GE-------V--VH-------EGMGHEGVKPQRAIFVK-DGLILSTGFTKRSERLYA
   WD 6  245-291    RAPEDLSTPIV--EE-------ELDTSNG-VVFPFYDED-SGLVYLVGKGDCAIRYYE
   WD 7  293-334    NND-------APYVH-------YINTYTT-NEPQRAVGF-QSKRGMSSEENEINRIYK

   WD40 Template    TGE-------C--LR-------TLSGHTS-GVTSVSFSP-DGKRLVSGSEDGTIKVWD