Input parameters:

  Query = R03E1.1 (Len=1043)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R03E1.1, Len=1043):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRRQIRTSPIENEGDEFKNGEEPSSSGHIFGRPQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMS 80  
WD40-rpts                                                                                      

Query       81 AVFNTPSLSSSGFPATSTSSIRDSSHRDRLISLRHRMNKEFGNRQLVGPTAQTDYEHDETMSTVSDAPSLHSWHHKMIVK 160 
WD40-rpts                                                                                      

Query      161 NETVIVNATDTLSSCAAPRSEMGFENSLISQSNTSANATITPMKVNIPIDESRHRSSTWTPTDSSCSGISPSTRVPPPIP 240 
WD40-rpts                                                                                      

Query      241 SRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDPIAFEVENRIEEERKKNLIQREISVGSSKSSDALMASTTPD 320 
WD40-rpts                                                                                      

Query      321 VKEVNGHRKSNSIDRGLTIAKAMKTGPFPPNALALGGREATGEEEERNVVAEEVIRQITTDVETAHNLSDCQNVDTMSLE 400 
WD40-rpts                                                                                      

Query      401 TIPSASNSTASSPSSASEAECKQIAIRIPDPIPEEAPSSSKSFGALESVNSLSPAKTVTNRNSRSLSNDELRTNKSDKLS 480 
WD40-rpts                                                                                      

Query      481 SSVDPITLDVERRLSMKRSGQHESDRHSIGSLDETTSNRTLSRTGIESAASFARNSVRYASGMLRGAFKRVRIAAHPGSS 560 
WD40-rpts                                                                                      

Query      561 SLNRHGIGEETSDGEESDEPHHPSVAPSNIVRPRKSKKGPYDFEHLTVEQELNNEHTGAIWCIKFSICGKLMATAGQDSI 640 
WD40-rpts                                         (______________________WD 1__________________

Query      641 LRVWVVRSHLQYFSDMREKYAANANPEADPMNSVDNMEHFRPPSSMESVVNSEATTASDDNNGLFCAKPFALLKGHTADI 720 
WD40-rpts      ____)            (___________________WD 2__________________)      (_____________

Query      721 LDVSWSKNYFILSSGMDRTVKLWHLSRNECLCCFQHIDFVTCVAFLPKDDRYFLSGSLDGKLRMWHIPDKKVAVWNDTEK 800 
WD40-rpts      ___WD 3________________)(__________________WD 4__________________)   (__________

Query      801 KYITAMTFVKSGKFAVVGTYDGKCIFYTSDQLKYHTAVDVRSTRGKNARGHKVTGLTSHGDKLLVTSNDSRIRMYDIRDK 880 
WD40-rpts      _______WD 5________________)(_____________________WD 6_____________________)   (

Query      881 ALTCKFKGVQNDHSQIRAAFSPDGRHIICGSEDKFVYIWRASDTTVALSVRKDRNSWWERVRTHNAPVPVAVFAPRPQVF 960 
WD40-rpts      __________________WD 7_________________)              (__________________WD 8___

Query      961 FNMLNKRDKHSKSDSIDFNISGQVLPGQSDSLTSNGNLSIPGHVIISADLNGVIKVMINRPRLVKANPLDPKNSRSRSST 1040
WD40-rpts      ______________)   (_________________WD 9_________________)                      

Query     1041 LLT 1043
WD40-rpts         

9 WD40-repeats found in QUERY=R03E1.1 (Len=1043):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   596-645      7.73  433.95  8.8e-05       22.5%     53.54
  WD 2:  Seg 10   658-700      3.88  274.92  0.01222       15.0%     24.48
  WD 3:  Seg 11   707-744      6.91  400.12  0.00025       30.0%     48.47
  WD 4:  Seg 15   745-786      6.88  398.92  0.00026       32.5%     54.84
  WD 5:  Seg 19   790-828      7.19  411.77  0.00018       20.0%     59.53
  WD 6:  Seg 23   829-876      5.12  326.10  0.00251       22.5%     51.99
  WD 7:  Seg 27   880-920      6.80  395.44  0.00029       27.5%     55.23
  WD 8:  Seg 32   935-975      4.44  298.16  0.00596       15.0%     35.68
  WD 9:  Seg 35   979-1018     5.58  345.30  0.00138       27.5%     46.31

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  596-645    SKK-G-------PYDFEHLTVEQELNNEHTG--AIWCI----K-FSI-CGKLMAT--AGQDSILRVWV
   WD 2  658-700    -EK-Y-------AANA----------NPEAD--PMNSVDNMEH-FRP-PSSMESV--VNSEATTASDD
   WD 3  707-744    -AK-P-------FALL----------KGHTA--DILDV----S-WSK-NY-FILS--SGMDRTVKLWH
   WD 4  745-786    LSRNE-------CLCC----------FQHID--FVTCV----A-FLPKDDRYFLS--GSLDGKLRMWH
   WD 5  790-828    -KK-V-------AVWN----------DTEKK--YITAM----T-FVK-SGKFAVV--GTYDGKCIFYT
   WD 6  829-876    SDQ-LKYHTAVDVRST----------RGKNA--RGHKV----TGLTS-HGDKLLV--TSNDSRIRMYD
   WD 7  880-920    -KA-L-------TCKF----------KGVQNDHSQIRA----A-FSP-DGRHIIC--GSEDKFVYIWR
   WD 8  935-975    -NS-W-------WERV----------RTHNA--PVPVA----V-FAP-RPQVFFNMLNKRDKHSKSDS
   WD 9  979-1018   -NI-S-------GQVL----------PGQSD--SLTSN---GN-LSI-PGHVIIS--ADLNGVIKVMI

   WD40 Template    TGE-C-------LRTL----------SGHTS--GVTSV----S-FSP-DGKRLVS--GSEDGTIKVWD