Accession: R06A4.9 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = R06A4.9 (Len=809)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R06A4.9, Len=809):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGGMMRGNQMPNVTLTIQPSTSSMQNSQPRIMNNHHHPHNRFQREHVMPDVMGDGPGRRLRKNVANVRRHVDYVSTVLN 80  
WD40-rpts                                                                                      

Query       81 HCENRLWQYGKQRILQQPDILYQQYAVPADSTPDVPVDCILTKFIRTAMNKVKCPVYSVCWSPEGKRLITGCQTGEFTLW 160 
WD40-rpts                                             (__________________WD 1__________________

Query      161 NGTAFNFETILQAHDSAIRALKWASNEQWLLSADQGGYVKYWQPNMNNAHMFSAHKDEAIRGLAFAPTDVKFATASDDGT 240 
WD40-rpts      )   (_________________WD 2________________)   (_________________WD 3____________

Query      241 ARVWDFARYTEERVLRGHGAEVRCIDWHPTKGLIATGSRDTQQPVKIWDPKSGSCLATLQEHKSSVMAVEFNKNGNWLLT 320 
WD40-rpts      ____)   (__________________WD 4_________________)   (_________________WD 5______

Query      321 GGRDHLVKMYDIRMMKEMRTYRAHKKEVISLAWHPIHEGLFVSGGGDGSIVYWMVDGEKEIGLLEHAHDQAIWSMKWHPL 400 
WD40-rpts      __________)   (_________________WD 6_________________)(___________________WD 7__

Query      401 GHILATGSNDNNTKFWARNRPGDTVEDIFGLSNTNMIGHLDKEREPRMAPPKPSIETQETYRPDTFIPGMGLDEHLYEQL 480 
WD40-rpts      ________________)            (_________________WD 8________________)            

Query      481 NRDHNMMTTDSTLLVPDDLTRQNFAPMIGAKRTLIKQPPAKKAQRQFERMWNNSKGIGAGSDDFTTMKGGLGREDAEGAQ 560 
WD40-rpts                                                                                      

Query      561 FGPSKSFLGPPTTGGSLLGPSQPRPQEFRSVPPPQQQQGPPPNWRHQGPPMSGPGQGYGPPGRMGGNQGGWQRPPPQGSY 640 
WD40-rpts                                                                                      

Query      641 GGQGPPQGSYGGQGTLQGSYASQQGPPPRQIQHIPSDIDYRTAPSSSNGSTGDVDMRTMVPNQPPSGEPEHWRGPPPVSH 720 
WD40-rpts                                                                                      

Query      721 QQQSQQQHPPPINMQRMDPRRDPRMLSGRSDQLSPSGPPPQQQQSSAQQGGKNQWMPQFEAGQNQNQGNYAGNRGGGVGG 800 
WD40-rpts                                                                                      

Query      801 RGRGRGQPY 809 
WD40-rpts

8 WD40-repeats found in QUERY=R06A4.9 (Len=809):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   120-161      9.59  510.77  8.1e-06       30.0%     49.60
  WD 2:  Seg  9   165-203      8.64  471.71  2.7e-05       20.0%     54.32
  WD 3:  Seg 13   207-245      9.16  493.04  1.4e-05       22.5%     52.33
  WD 4:  Seg 17   249-289      8.15  451.12  5.2e-05       30.0%     55.78
  WD 5:  Seg 21   293-331      9.91  523.94  5.4e-06       40.0%     54.85
  WD 6:  Seg 25   335-374      7.91  441.22  7.0e-05       35.0%     54.64
  WD 7:  Seg 29   375-417      8.03  446.55  6.0e-05       27.5%     46.76
  WD 8:  Seg 33   430-468      6.64  389.04  0.00036       10.0%     38.06

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  120-161    IL---TKFIRTAMNKVKCPVYSVCWSPEGKRL-ITGCQTG--EFTLWN
   WD 2  165-203    -F---NF--ETILQAHDSAIRALKWASNEQWL-LSADQGG--YVKYWQ
   WD 3  207-245    -N---NA--HMFSAHKDEAIRGLAFAPTDVKF-ATASDDG--TARVWD
   WD 4  249-289    -Y---TE--ERVLRGHGAEVRCIDWHPTKGLI-ATGSRDTQQPVKIWD
   WD 5  293-331    -G---SC--LATLQEHKSSVMAVEFNKNGNWL-LTGGRDH--LVKMYD
   WD 6  335-374    -M---KE--MRTYRAHKKEVISLAWHPIHEGLFVSGGGDG--SIVYWM
   WD 7  375-417    VDGEKEI--GLLEHAHDQAIWSMKWHPLGHIL-ATGSNDN--NTKFWA
   WD 8  430-468    -G---LS--NTNMIGHLDKEREPRMAPPKPSI-ETQETYR--PDTFIP

   WD40 Template    TG---EC--LRTLSGHTSGVTSVSFSPDGKRL-VSGSEDG--TIKVWD