Input parameters:

  Query = R11D1.1b (Len=622)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R11D1.1b, Len=622):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLVEEEPPPENEENMDIEISKSTNNQFKIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRF 80  
WD40-rpts                  (_________________WD 1_________________)       (_______________WD 2_

Query       81 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRG 160 
WD40-rpts      _____________)(______________________WD 3_____________________)(________________

Query      161 DVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 240 
WD40-rpts      ___WD 4___________________)(____________________WD 5____________________)       

Query      241 VYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATG 320 
WD40-rpts         (_________________WD 6________________)         (_________________WD 7_______

Query      321 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLP 400 
WD40-rpts      _________)                          (_________________WD 8________________)   (_

Query      401 WSYDLPFERRPHGTYDLSAEEECLREMEERRVVEDALDLNGEMDGRACWRDIFGGDARTAEDRDTLEMFDPRGHGDDEED 480 
WD40-rpts      ________________________________WD 9_________________________________)          

Query      481 VEESSSEDSDDMMDNEADDNHYFRRRRGPLQLFVLLQRAGEEHLARMLEEHDGVENDLLEELFNMRRRFREESSDEDDSG 560 
WD40-rpts                                                                                      

Query      561 DDGENGDENDNENDNIESSSSNSDSSDASEVGDLMDFDGDDEEEDEGDDEAAIEEQDSDSEA 622 
WD40-rpts                                                                    

9 WD40-repeats found in QUERY=R11D1.1b (Len=622):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       4.40  296.54  0.00626       10.0%     13.32
  WD 2:  Seg  3    60-94       8.44  463.47  3.5e-05       25.0%     46.41
  WD 3:  Seg  6    95-143      7.75  434.76  8.6e-05       27.5%     46.20
  WD 4:  Seg  9   144-187      6.91  400.02  0.00025       10.0%     54.46
  WD 5:  Seg 13   188-233      5.92  359.18  0.00090       22.5%     48.10
  WD 6:  Seg 17   244-282      7.76  435.17  8.5e-05       15.0%     46.32
  WD 7:  Seg 21   292-330      5.99  362.03  0.00082       17.5%     32.92
  WD 8:  Seg 25   357-395      8.53  466.83  3.2e-05       32.5%     49.54
  WD 9:  Seg 28   399-470      3.41  255.50  0.02222       12.5%      6.06

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     ENM-----DI---------EISKSTNNQFKIESFLC---------------------------------QREIG-SVKSVVKTFRPDF
   WD 2   60-94     -------------------KDVREHTGCINALQFSH---------------------------------NDRFL-ASGGDDMHGRVWN
   WD 3   95-143    VDE-----LMVRKTPKPIGVMEHPHRSNIFSLEFDL---------------------------------ENRFL-YSGERWGTVIKHD
   WD 4  144-187    IET-KQSIYV---------ANENNNRGDVYHMDQHP---------------------------------TDNTL-IVVTRAKLVSFID
   WD 5  188-233    NRDRQNPISL---------VLPANSGKNFYTAEFHP---------------------------------ETPALILVNSETGGPNVFD
   WD 6  244-282    -RS-----MF---------KGLPQENTEWMGSLWSP---------------------------------SGNQF-MSIRRGKCPLYFD
   WD 7  292-330    KSD-----HN---------PNGYCNIKTIKSMTFI----------------------------------DDYTV-ATGSDHWGIHIWK
   WD 8  357-395    -EK-----EL---------TVLRGHRSVPNQVRFSQ---------------------------------HNNLL-VSSGVENSFKLWS
   WD 9  399-470    -LP-----WS---------YDLPFERRPHGTYDLSAEEECLREMEERRVVEDALDLNGEMDGRACWRDIFGGDA-RTAEDRDTLEMFD

   WD40 Template    TGE-----CL---------RTLSGHTSGVTSVSFSP---------------------------------DGKRL-VSGSEDGTIKVWD