Input parameters:

  Query = R166.4 (Len=529)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (R166.4, Len=529):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYLGVDTSRIAGTQPLEMLLVSSGSPDPHSTIIIDPRTGVSSWSYKGSELQGASTGLVEPLGHDGEHVVITTKERPLVH 80  
WD40-rpts      (_______________WD 1_______________)          (________________WD 2_____________

Query       81 VLAVHPKDRFHQKCVLPGPVSAIVSDNSGHFVFMSIKRQLYCWLLSTGELLSVIDAHYQNITKIVISDDDSMIFTASKDG 160 
WD40-rpts      __)   (________________WD 3________________)   (_________________WD 4___________

Query      161 AVHGYLVTDLVSADRDHTVAPFRKWASHTLSISDLKITNGSNPRVLSAGADHIACLHSISMDSVILKASSDRPLTACAID 240 
WD40-rpts      _____)            (_________________WD 5_________________)(__________________WD 

Query      241 PAETRIFIGTEVGNIAQINLFQLAPEERDLLVQAGDEHNTKFRVLNGHSDEISRLAINTDGTLLASGDASGKYCIWEISS 320 
WD40-rpts      6_________________)                   (_________________WD 7________________)  (

Query      321 HQCLKVSTMRSVINTLRFIPFWKTISGGEHVAKFRPVWDLKREPTKCDRFAIEVSTEFNSDQKHWNDVIEETIDQLLLES 400 
WD40-rpts      _________________WD 8_________________)             (_________________WD 9______

Query      401 GSKSSAQLQWDAEGPARNEAAKAEKAAENTIKNIITLGDDEDDAPEVGNQRRKSGKKNKKNRKNQKKNDFEAAVIEKKQV 480 
WD40-rpts      __________)                                                                     

Query      481 EPIVIDDEEEVNSSLQKKFDALKAENEKLKEINKQMYEFVAKEIVDSEK 529 
WD40-rpts                                                       

9 WD40-repeats found in QUERY=R166.4 (Len=529):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       3.43  256.18  0.02176       10.0%      3.97
  WD 2:  Seg  5    47-83       7.44  422.06  0.00013       15.0%     40.13
  WD 3:  Seg  8    87-124      6.23  371.92  0.00060       12.5%     52.17
  WD 4:  Seg 12   128-166      9.49  506.49  9.3e-06       25.0%     53.96
  WD 5:  Seg 16   179-218      6.61  387.62  0.00037       15.0%     54.81
  WD 6:  Seg 20   219-259      7.53  425.59  0.00011       17.5%     57.88
  WD 7:  Seg 24   279-317      8.56  468.42  3.0e-05       27.5%     53.34
  WD 8:  Seg 28   320-359      6.75  393.47  0.00031       22.5%     44.47
  WD 9:  Seg 32   373-411      6.63  388.47  0.00036       20.0%     44.78

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     -----MAYLGVDTSRIAGTQPLEML-LVSSGSPDPHSTI-IID
   WD 2   47-83     KG-S---ELQGASTGLVEPLGHDGE-HVVITTKERPLVH-VLA
   WD 3   87-124    -K-DRFHQKCVLPGPVSAIVSDNSG--HFVFMSIKRQLY-CWL
   WD 4  128-166    -G-ELLSVIDAHYQNITKIVISDDD-SMIFTASKDGAVH-GYL
   WD 5  179-218    -V-APFRKWASHTLSISDLKITNGSNPRVLSAGADHIAC-LHS
   WD 6  219-259    ISMDSVILKASSDRPLTACAIDPAE-TRIFIGTEVGNIA-QIN
   WD 7  279-317    -N-TKFRVLNGHSDEISRLAINTDG-TLLASGDASGKYC-IWE
   WD 8  320-359    -S-HQCLKVSTMRSVINTLRFIPFW-KTISGGEHVAKFRPVWD
   WD 9  373-411    EV-S-TEFNSDQKHWNDVIEETIDQ-LLLESGSKSSAQL-QWD

   WD40 Template    TG-ECLRTLSGHTSGVTSVSFSPDG-KRLVSGSEDGTIK-VWD