Input parameters:

  Query = T01C3.1 (Len=682)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T01C3.1, Len=682):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDFLHSTKARKRYLRYPSSIYEELESKHYSMPAGETDDHDTWVTARFSPHLNQEHILYMGDDPGNIGIFDVRKFQDRSVP 80  
WD40-rpts                                   (__________________WD 1_________________)          

Query       81 LEERQLYFFPAHDGAIMDVVGVPQKESQIVSISGDSTIRCWDLNQSTLDRKSQVFFGHEGSVRSICFAPDDPNVFVTGGR 160 
WD40-rpts        (_________________WD 2_________________)      (_________________WD 3__________

Query      161 DFQVKIWDMRVSTVKKMEEDCRMATITYKTAHPKPSKVLTSGTPKSKAKAKTIEGYKVTSVLFLDEHHVASASENADSGI 240 
WD40-rpts      _______)   (__________________WD 4_________________)(_____________WD 5__________

Query      241 RVWDIRKPTRNGEGQPARILKVPTSNKKSYGVTCLTLDRFGNRLFASCTDSSIFEYSVPSESVSPINSYTGATIHNFYTQ 320 
WD40-rpts      ___)                 (_______________WD 6_______________)     (_________________

Query      321 VACSPVSDVIACGSEDSRAVVWDLQDQYNYMNDRKLPDDIDKRRTKLPRFSCDGHLKQVLNVGWSSRGTYFMSCDEGGVR 400 
WD40-rpts      _WD 7_________________)                          (______________WD 8____________

Query      401 IWSEPRNRCTWKLNDEDDTSYPTTSQELGLSYEKIKKFELKESDEAMSCFDSISLSPRQRADSSGLSGSPQKNRGSKRPI 480 
WD40-rpts      __)                                  (________________WD 9________________)     

Query      481 FESPLKSICTNSPKPLRLNRSPRAKMSKLSFSPPSPLQPTNSNNQDLVGYRTPRQIRNKKKKNNPFYNEHPTEGLPNFVY 560 
WD40-rpts                                                                                      

Query      561 DTFVKKLIGESSKSDIEDSGKSLSKTGQKRIEDWWQTKGENVATVTRARLPSVSEFGESACSKVITEDERIALHSPRKLV 640 
WD40-rpts                                                                                      

Query      641 LKSSSTQSPCPSNSKPKPIPMTPRKPMDKRPTSRNLLHYFKK 682 
WD40-rpts                                                

9 WD40-repeats found in QUERY=T01C3.1 (Len=682):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    30-70       5.28  332.78  0.00204       25.0%     46.51
  WD 2:  Seg  6    83-122      7.26  414.68  0.00016       30.0%     45.75
  WD 3:  Seg  9   129-168      8.20  453.41  4.8e-05       32.5%     50.53
  WD 4:  Seg 13   172-212      5.85  356.46  0.00098       12.5%     48.96
  WD 5:  Seg 17   213-244      4.70  308.91  0.00427       30.0%     34.82
  WD 6:  Seg 21   262-297      8.10  449.43  5.5e-05       22.5%     43.30
  WD 7:  Seg 24   303-343      7.47  423.17  0.00012       32.5%     51.01
  WD 8:  Seg 28   370-403      6.90  399.78  0.00025       22.5%     44.10
  WD 9:  Seg 32   438-475      4.51  300.75  0.00550       20.0%     19.44

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-70     SMPAGETDD--HD--TWV-TARFSPHLNQEH-I-L-YMGDDPGNIGIFD
   WD 2   83-122    ERQLYFFPA--HD--GAIMDVVGVP---QKESQ-I-VSISGDSTIRCWD
   WD 3  129-168    DRKSQVFFG--HE--GSVRSICFAP---DDP-NVF-VTGGRDFQVKIWD
   WD 4  172-212    STVKKMEEDCRMA--TITYKTAHPK---PSK-V-L-TSGTPKSKAKAKT
   WD 5  213-244    ------IEG--YK----VTSVLFLD---EHH-V-ASASENADSGIRVWD
   WD 6  262-297    ---VPTSNK--KS--YGVTCLTLDR---FGN-R-L-FASCTDSSIFEYS
   WD 7  303-343    VSPINSYTG--ATIHNFYTQVACSP---VSD-V-I-ACGSEDSRAVVWD
   WD 8  370-403    ----FSCDG--HL--KQVLNVGWSS---RGT-Y-F-MSCD-EGGVRIWS
   WD 9  438-475    FELKESDEA--MS--C-FDSISLSP---RQR-A-D-SSGLSGSPQKNRG

   WD40 Template    GECLRTLSG--HT--SGVTSVSFSP---DGK-R-L-VSGSEDGTIKVWD