Input parameters:

  Query = T01G1.1a (Len=1605)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T01G1.1a, Len=1605):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADTCVQVALRIRPQGNREKLEGSRVCTSVLPNDPQVTIGGDRSFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYNATV 80  
WD40-rpts                                                                                      

Query       81 LAYGQTGSGKTHTMGTAFDAAVTQKEEDLGVIPRAIQHTFRKIAECKAQAIEQGLLEPAFEVSVQFVELYNDDVLDLLSD 160 
WD40-rpts                                                                                      

Query      161 DRSMSSSIRIHEDSRGEIVLHGVEQRSVFDMHGTMDILKNGALNRTVAATNMNEQSSRSHAIFTLHLKQQRVAANPLDES 240 
WD40-rpts                                                                                      

Query      241 GEQKTGELEMEMLCAKFHFVDLAGSERMKRTGATGDRAKEGISINVGLLALGNVIAALGGANGKVSHVPYRDSKLTRLLQ 320 
WD40-rpts                                                                                      

Query      321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRIAALEAELLEFKQGRRTVDVD 400 
WD40-rpts                                                                                      

Query      401 GHEVVNDQYHENVYLTSEVNHLRFRVKALNETLDILRTENIDLKAKQEFNSIASLPTAGSGGAEGEVDAIQSTFRKYLEE 480 
WD40-rpts                                                                                      

Query      481 LERTKSLLYESQSTCDQLRKDNARWKALGASRGSGGGNAEFNSQKLIEMAKQEVEKQRKLMESVNIGGENVSSEYSSMAQ 560 
WD40-rpts                                                                                      

Query      561 DEDGTSNEAEELLDEEDLDEDEDETAEEKQEQEESEALQIDLSEVMIELDIKEKLIDQLERAERQNQQIRETYEKKLREL 640 
WD40-rpts                                                                                      

Query      641 MERIKDTETERDRVLNEGGKRGGNNEQMKAIKQEYELKITDLRKELKKIEALDKEHLKVIAKSQRELQEKTRLKSEVVDL 720 
WD40-rpts                                                                                      

Query      721 KKAKVELIKKMNEDKKKQKTQQLANARAFATKEKQTRLQANKIRTLEMKDKQREQFLKKTTQEVNALRKEKAVAAATARQ 800 
WD40-rpts                                                                                      

Query      801 ANRGTPRGGAAVTNSPARRVRGVVGGVQAIKELAFSAKASKVKWDVIVRKIEESARRRQIVQKMEAELERYLNERHAVMV 880 
WD40-rpts                                                                                      

Query      881 EIVENEKQFTQSQDVIYRDGLLEAIDSAKQKLQYVQDQITYQQKLICDVDEDITASNAENEPILDVGLKKQTIKQLFDGC 960 
WD40-rpts                                                                                      

Query      961 DTLSEARYLLQHLFDLCIDKAALAAKVESEFKECAARIEQLEQQSSLKEQLLTSIIEDKNLVDEIEGFVPSDLRKSRTSS 1040
WD40-rpts                                                                                      

Query     1041 QSSLLRSGSPSVVEDAHTLQNYKVRRHTATQEELLFANSEENSMVSDANANPTVDVGADVGDSDERKEKKKRIAFVSTSP 1120
WD40-rpts                                                                                      

Query     1121 ASTSFANSTSQSPSFSRNTRFRSTVGGVSNNNNIRKSVQPLINGKGVSSTARKGISRLPSVTEDPEIGIFAKSFPGRSRS 1200
WD40-rpts                                                                                      

Query     1201 NLMSSSSSTTTTTLSSSNLLNPRGTTSSSSSKSVFARISPSWLSDTCAELIMRNNNRKQSRIVPVKDGMRGNVITRTHTL 1280
WD40-rpts                                                                                     (

Query     1281 EGHARGVLSVDVNEKLMVTGSKDRTAKLWDIEACREIRTLGIHPNNVHLVKFVPFSNYVFTFSMFEARAWDYRTPECICV 1360
WD40-rpts      _____________WD 1____________)         (_____________WD 2_____________)         

Query     1361 KVLNSSGQVNEGDSIDVSQVMPRQNTIPFLETLITAADVDPTGQLLFTSFSAYVRVWNLREWKPLGRLNAASHSPKSEVS 1440
WD40-rpts                                                                       (______________

Query     1441 CLRTTMTPEGSILAYTGSRDHYVKEYEVGLGTGVIESKCEFTPPHYDNVTAVLPLNGHLYTASKDVNIMKFSLKDGKREH 1520
WD40-rpts      ____WD 3__________________)                           (_________________________

Query     1521 LELRAHQQYIQSLTGFGPKGKELLVSACKDGTIRFWDVGSSSRMKLVEEYSKAHQEGINDMCSTKSMLFTASGDSTVGFW 1600
WD40-rpts      ____WD 4____________________________)                                           

Query     1601 KSNAV 1605
WD40-rpts           

4 WD40-repeats found in QUERY=T01G1.1a (Len=1605):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14  1280-1310     5.21  330.05  0.00222       40.0%     23.59
  WD 2:  Seg 16  1320-1351     3.52  260.05  0.01932       22.5%     38.63
  WD 3:  Seg 21  1426-1467     3.92  276.66  0.01158       17.5%     35.39
  WD 4:  Seg 25  1495-1557     3.27  249.72  0.02653       30.0%     34.74

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1280-1310   -------LEGHARGVLSVD--VNE-----------------------K---LMVTGSKDRTAKLWD
   WD 2 1320-1351   -------LGIHPNNVHLVKFVPFS-----------------------N---YVFTFS-MFEARAWD
   WD 3 1426-1467   -GRLNAASHSPKSEVSCLRTTMTP-----------------------EGSILAYTGSRDHYVKEYE
   WD 4 1495-1557   LNGHLYTASKDVNIMKFSLKDGKREHLELRAHQQYIQSLTGFGPKGKE---LLVSACKDGTIRFWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-----------------------K---RLVSGSEDGTIKVWD