Input parameters:

  Query = T01G1.1c (Len=1580)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T01G1.1c, Len=1580):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADTCVQVALRIRPQGNREKLEGSRVCTSVLPNDPQVTIGGDRSFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYNATV 80  
WD40-rpts                                                                                      

Query       81 LAYGQTGSGKTHTMGTAFDAAVTQKEEDLGVIPRAIQHTFRKIAECKAQAIEQGLLEPAFEVSVQFVELYNDDVLDLLSD 160 
WD40-rpts                                                                                      

Query      161 DRSMSSSIRIHEDSRGEIVLHGVEQRSVFDMHGTMDILKNGALNRTVAATNMNEQSSRSHAIFTLHLKQQRVAANPLDES 240 
WD40-rpts                                                                                      

Query      241 GEQKTGELEMEMLCAKFHFVDLAGSERMKRTGATGDRAKEGISINVGLLALGNVIAALGGANGKVSHVPYRDSKLTRLLQ 320 
WD40-rpts                                                                                      

Query      321 DSLGGNSRTLMIACCSPSDSDFVETLNTMKYANRAKEIKNKVVANQDKSSKMIGELRSRIAALEAELLEFKQGRRTVDVD 400 
WD40-rpts                                                                                      

Query      401 GHEVVNDQYHENVYLTSEVNHLRFRVKALNETLDILRTENIDLKAKQEFNSIASLPTAGSGGAEGEVDAIQSTFRKYLEE 480 
WD40-rpts                                                                                      

Query      481 LERTKSLLYESQSTCDQLRKDNARWKALGASRGSGGGNAEFNSQKLIEMAKQEVEKQRKLMESVNIGGENVSSEYSSMAQ 560 
WD40-rpts                                                                                      

Query      561 DEDGTSNEAEELLDEEDLDEDEDETAEEKQEQEESEALQIDLSEVMIELDIKEKLIDQLERAERQNQQIRETYEKKLREL 640 
WD40-rpts                                                                                      

Query      641 MERIKDTETERDRVLNEGGKRGGNNEQMKAIKQEYELKITDLRKELKKIEALDKEHLKVIAKSQRELQEKTRLKSEVVDL 720 
WD40-rpts                                                                                      

Query      721 KKAKVELIKKMNEDKKKQKTQQLANARAFATKEKQTRLQANKIRTLEMKDKQREQFLKKTTQEVNALRKEKAVAAATARQ 800 
WD40-rpts                                                                                      

Query      801 ANRGTPRGGAAVTNSPARRVRGVVGGVQAIKELAFSAKASKVKWDVIVRKIEESARRRQIVQKMEAELERYLNERHAVMV 880 
WD40-rpts                                                                                      

Query      881 EIVENEKQFTQSQDVIYRDGLLEAIDSAKQKLQYVQDQITYQQKLICDVDEDITASNAENEPILDVGLKKQTIKQLFDGC 960 
WD40-rpts                                                                                      

Query      961 DTLSEARYLLQHLFDLCIDKAALAAKVESEFKECAARIEQLEQQSSLKEQLLTSIIEDKNLVDEIEGFVPSDLRKSRTSS 1040
WD40-rpts                                                                                      

Query     1041 QSSLLRSGSPSVVEDAHTLQNYKVRRHTATQEELLFANSEENSMVSDANANPTVDVGADVGDSDERKEKKKRIAFVSTSP 1120
WD40-rpts                                                                                      

Query     1121 ASTSFANSTSQSPSFSRNTRFRSTVGGVSNNNNIRKSVQPLINGKGVSSTARKGISRLPSVTEDPEIGIFAKSFPGRSRS 1200
WD40-rpts                                                                                      

Query     1201 NLMSSSSSTTTTTLSSSNLLNPRGTTSSSSSKKQSRIVPVKDGMRGNVITRTHTLEGHARGVLSVDVNEKLMVTGSKDRT 1280
WD40-rpts                                                            (_____________WD 1________

Query     1281 AKLWDIEACREIRTLGIHPNNVHLVKFVPFSNYVFTFSMFEARAWDYRTPECICVKVLNSSGQVNEGDSIDVSQVMPRQN 1360
WD40-rpts      ____)         (_____________WD 2_____________)                                  

Query     1361 TIPFLETLITAADVDPTGQLLFTSFSAYVRVWNLREWKPLGRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRDHYVKE 1440
WD40-rpts                                              (__________________WD 3_________________

Query     1441 YEVGLGTGVIESKCEFTPPHYDNVTAVLPLNGHLYTASKDVNIMKFSLKDGKREHLELRAHQQYIQSLTGFGPKGKELLV 1520
WD40-rpts      _)        (________________WD 4_______________)                                 

Query     1521 SACKDGTIRFWDVGSSSRMKLVEEYSKAHQEGINDMCSTKSMLFTASGDSTVGFWKSNAV 1580
WD40-rpts                                                                  

4 WD40-repeats found in QUERY=T01G1.1c (Len=1580):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14  1255-1285     5.08  324.39  0.00264       40.0%     26.65
  WD 2:  Seg 17  1295-1326     3.38  254.45  0.02294       22.5%     40.31
  WD 3:  Seg 22  1401-1442     3.92  276.47  0.01165       17.5%     35.36
  WD 4:  Seg 25  1451-1487     3.30  251.05  0.02546       22.5%     18.97

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1255-1285   ------LEGHARGVLSVD--VNEK---LMVTGSKDRTAKLWD
   WD 2 1295-1326   ------LGIHPNNVHLVKFVPFSN---YVFTFS-MFEARAWD
   WD 3 1401-1442   GRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRDHYVKEYE
   WD 4 1451-1487   ESKCEFTPPHYDNVTAV--LPLNG---HLYTASKDVNIMKFS

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGK---RLVSGSEDGTIKVWD