Input parameters:

  Query = T02H6.1b (Len=518)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T02H6.1b, Len=518):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPAFFVKAGAKKSGGGAAATRKRKNGGKSDAKSEEMAAKMSRRQKIMAATEIHSDEEDSLAGSAAASEAGSDVEYEDAHE 80  
WD40-rpts                                                    (_____________________WD 1________

Query       81 RNYREAKKLLDKIQSTTTTQEEVAEKLRDDAVARTGTQVKRVADVVELEDDLEISYKPHRLSPLCVAFSPDAKYVISCGK 160 
WD40-rpts      _____________)                                   (_________________WD 2_________

Query      161 ESSIVKFNVGTRKVVGIIKRTKKRAGVPEEPTNAHYGVIFTVAVSPDQKFIASGGFDQVVKIWNFDSLEHIKDLSGHRGP 240 
WD40-rpts      _______)                 (_________________WD 3________________)   (____________

Query      241 IFSLTFQLKTNNLYSASQDRSVKMWDIDQLGLVDTMYGHQDGVQQIGVLSKQRVATVGGRDRSARLWKVEDESQLMFSGL 320 
WD40-rpts      _____WD 4________________)   (_________________WD 5________________)  (_________

Query      321 QNCVSLDCVAMINEEHFATGSADGSIALWSFWKKRALHVRKQAHGTQNGSGRWIVALAVLPYSDLLASGSNEGELKLWKI 400 
WD40-rpts      ________WD 6_________________)          (_________________WD 7________________)(

Query      401 SENFRQLTPFFSYSIPGFINSINFAPNGKSIVVGAGKEHKDGRWWVDREARNQVVILPIKYTDGSDNNDVTIGDKTASGT 480 
WD40-rpts      _____________________WD 8____________________)(_____________________WD 9________

Query      481 VSGASAGGGGGIESGDESEEEEEELEEELEEEEEEIEE 518 
WD40-rpts      _____________)                        

9 WD40-repeats found in QUERY=T02H6.1b (Len=518):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    47-94       7.01  404.32  0.00022       12.5%     30.09
  WD 2:  Seg  7   130-168      8.88  481.53  2.0e-05       22.5%     54.31
  WD 3:  Seg 12   186-224      9.12  491.37  1.5e-05       30.0%     43.02
  WD 4:  Seg 15   228-266      9.79  518.94  6.3e-06       35.0%     51.87
  WD 5:  Seg 19   270-308      8.95  484.43  1.8e-05       20.0%     52.76
  WD 6:  Seg 23   311-350      6.74  393.23  0.00031       25.0%     54.09
  WD 7:  Seg 28   361-399      8.97  485.02  1.8e-05       25.0%     47.47
  WD 8:  Seg 31   400-446      6.21  371.16  0.00062       27.5%     55.41
  WD 9:  Seg 35   447-494      6.88  398.81  0.00026       10.0%     39.72

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-94     ---------------MAATEIHS--DEED-SLAGSAAASEAGSDV--EYEDAHERNYREAKKLLDKIQ
   WD 2  130-168    -DD---L--------EISYKPHR--LSPL-CVAFSPDAKYVISCG--KESSIVKFN------------
   WD 3  186-224    -GV---P--------EEPTNAHY--GVIF-TVAVSPDQKFIASGG--FDQVVKIWN------------
   WD 4  228-266    -LE---H--------IKDLSGHR--GPIF-SLTFQLKTNNLYSAS--QDRSVKMWD------------
   WD 5  270-308    -LG---L--------VDTMYGHQ--DGVQ-QIGVLSKQRVATVGG--RDRSARLWK------------
   WD 6  311-350    -DE---S--------QLMFSGLQ--NCVSLDCVAMINEEHFATGS--ADGSIALWS------------
   WD 7  361-399    -KQ---A--------HGTQNGSG--RWIV-ALAVLPYSDLLASGS--NEGELKLWK------------
   WD 8  400-446    ISENFRQ--------LTPFFSYSIPGFIN-SINFAPNGKSIVVGAGKEHKDGRWWV------------
   WD 9  447-494    DRE---ARNQVVILPIKYTDGSD--NNDV-TIGDKTASGTVSGAS--AGGGGGIES------------

   WD40 Template    TGE---C--------LRTLSGHT--SGVT-SVSFSPDGKRLVSGS--EDGTIKVWD------------