Input parameters:

  Query = T03F6.5 (Len=404)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T03F6.5, Len=404):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLSERQKEEINRAIAEYMQNNGYSESFSVFLKESSLSENDIKPLGGILEKKWTTVLRLQRKVNDLESKLQESQREINHG 80  
WD40-rpts                                                                                      

Query       81 APTRDKRQAADWIPRPPETQKLTGHRLPITRVIFHPLWTIMASCSEDATIKVWDYETGQLERTLKGHTDAVNDIAIDAAG 160 
WD40-rpts                     (_________________WD 1________________)   (_________________WD 2_

Query      161 KQLVSCSSDLSIKLWDFGQTYDCLKSLKGHEHTVSSVTFLPTGDFVLSASRDHTIKQWDISTGYCVYTFRGHNDWVRMIR 240 
WD40-rpts      _______________)    (_________________WD 3________________)   (_________________

Query      241 ISNDGTLFASASLDQTVTVWSFATKSAKLVLRDHEHAVECVEWAPDTAYTNVTGQQPEGNSTHILFSGSRDRSIKAWNIN 320 
WD40-rpts      WD 4________________)   (________________________WD 5________________________)  

Query      321 TGDVLFTLLAHENWVRGLAFHPKGKYLISVADDKTLRVWELSAQRCMKAIEAHEHFVSTVAFHQTSPFVITGSVDMSCKV 400 
WD40-rpts       (_________________WD 6________________)   (_________________WD 7_______________

Query      401 WECR 404 
WD40-rpts      _)  

7 WD40-repeats found in QUERY=T03F6.5 (Len=404):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    96-134      9.98  526.83  4.9e-06       42.5%     53.30
  WD 2:  Seg  6   138-176     10.67  555.53  2.0e-06       47.5%     54.33
  WD 3:  Seg 10   181-219     10.59  552.22  2.2e-06       47.5%     55.18
  WD 4:  Seg 14   223-261     10.14  533.63  4.0e-06       37.5%     55.34
  WD 5:  Seg 18   265-318      7.44  422.10  0.00013       35.0%     49.20
  WD 6:  Seg 22   322-360     10.43  545.47  2.8e-06       40.0%     57.33
  WD 7:  Seg 26   364-402      9.68  514.66  7.2e-06       27.5%     51.71

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   96-134    PPETQKLTGHRLPITRVIFHPLWTI---------------MASCSEDATIKVWD
   WD 2  138-176    GQLERTLKGHTDAVNDIAIDAAGKQ---------------LVSCSSDLSIKLWD
   WD 3  181-219    YDCLKSLKGHEHTVSSVTFLPTGDF---------------VLSASRDHTIKQWD
   WD 4  223-261    GYCVYTFRGHNDWVRMIRISNDGTL---------------FASASLDQTVTVWS
   WD 5  265-318    KSAKLVLRDHEHAVECVEWAPDTAYTNVTGQQPEGNSTHILFSGSRDRSIKAWN
   WD 6  322-360    GDVLFTLLAHENWVRGLAFHPKGKY---------------LISVADDKTLRVWE
   WD 7  364-402    QRCMKAIEAHEHFVSTVAFHQTSPF---------------VITGSVDMSCKVWE

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKR---------------LVSGSEDGTIKVWD