Input parameters:

  Query = T05H4.14 (Len=620)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T05H4.14, Len=620):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDNTAPKKNSEKKARVFDLQAMFAQTISNAPRTEEPTHVPQSVSVSSKSESGVSSSAVSDDEDDFMPDLPPGFQMQQSE 80  
WD40-rpts                                  (__________________WD 1_________________) (_________

Query       81 AGPSSSRAEGPEDSDDSDFDETEAISIIKLIPAACEAKISHGTQAISALRVEPPGVRFASGGLDYYVKLFDFQKMDMSMR 160 
WD40-rpts      ________WD 2________________)   (_________________WD 3________________)     (___

Query      161 YDKELLPAESHVINSLAFSPNGETLVVASGEAIIRLLDRAGKQWSETVRGDQYIIDLNITKGHTATVNCVEFNPLNKNEF 240 
WD40-rpts      _______________WD 4__________________)           (___________________WD 5_______

Query      241 ISCSDDGSLRLWNLDDHKVITKCINKHRKVIKTKGANGKRVSPQVCTFSPDGKWIAAGCDDGSVQAWKYGSQYVNVNYLV 320 
WD40-rpts      ____________)           (___________________WD 6___________________)(___________

Query      321 RKAHNGSITSIAFSPDSKRLLSRGFDDTLKMWSLDNPKEPLLVKTGLENAFKSTDCGFSPRAEVVFTGTSSPNKDTPGTL 400 
WD40-rpts      _________WD 7___________________)(_______________________WD 8___________________

Query      401 QFFDPMTFDLVYKIDYPGISCHRIQWHPRLNQIIAGLSDGTIHVYYDQTMSQRGVMSCVTKPLKRNRASEVVREDMVLSP 480 
WD40-rpts      ___)   (_________________WD 9________________)(______________WD10______________)

Query      481 LSLEMFQPRGEEGEEKEVTGWRIKKYLRMQDNKLRPEFRKPADMPINGKSANGRVAASGGSLHSYLAKQIGTARNAEFLK 560 
WD40-rpts                                    (_________________WD11________________)           

Query      561 DTDVRASILKHAKDAEENPLYIDKAYRKTQPKKIFQETAVEPEDQDDEELQPVFKMPRTK 620 
WD40-rpts                                                                  

11 WD40-repeats found in QUERY=T05H4.14 (Len=620):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    29-69       7.55  426.36  0.00011       20.0%     36.08
  WD 2:  Seg  6    71-109      6.55  385.32  0.00040       10.0%     42.88
  WD 3:  Seg 10   113-151      9.07  489.28  1.6e-05       27.5%     54.22
  WD 4:  Seg 14   157-198      8.23  454.66  4.6e-05       27.5%     46.57
  WD 5:  Seg 18   210-253      8.13  450.62  5.3e-05       32.5%     47.74
  WD 6:  Seg 23   265-308      8.40  461.79  3.7e-05       27.5%     48.26
  WD 7:  Seg 27   309-353      9.27  497.62  1.2e-05       40.0%     52.14
  WD 8:  Seg 31   354-404      6.00  362.66  0.00081       22.5%     50.26
  WD 9:  Seg 35   408-446      8.02  445.81  6.1e-05       17.5%     57.09
  WD10:  Seg 39   447-480      3.05  240.54  0.03512       12.5%     23.44
  WD11:  Seg 42   511-549      4.76  311.20  0.00398       15.0%     24.75

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   29-69     SN--A-----PRTEEPTHVPQSVSVSSKSE-SGVSSSAVSDD------EDDFMPD
   WD 2   71-109    -P--P-----GFQMQQSEAG-PSSSRAEGP-EDSDDSDFDET------EAISIIK
   WD 3  113-151    -A--A-----CEAKISHGTQ-AISALRVEP-PGVRFASGGLD------YYVKLFD
   WD 4  157-198    MSMRY-----DKELLPAESH-VINSLAFSP-NGETLVVASGE------AIIRLLD
   WD 5  210-253    GD--Q--YIIDLNITKGHTA-TVNCVEFNPLNKNEFISCSDD------GSLRLWN
   WD 6  265-308    NK--H-RKVIKTKGANGKRV-SPQVCTFSP-DGKWIAAGCDD------GSVQAWK
   WD 7  309-353    YG--SQYVNVNYLVRKAHNG-SITSIAFSP-DSKRLLSRGFD------DTLKMWS
   WD 8  354-404    LD--NPKEPLLVKTGLENAF-KSTDCGFSP-RAEVVFTGTSSPNKDTPGTLQFFD
   WD 9  408-446    -F--D-----LVYKIDYPGI-SCHRIQWHP-RLNQIIAGLSD------GTIHVYY
   WD10  447-480    -------------DQTMSQR-GVMSCVTKP-LKRNRASEVVR------EDMVLSP
   WD11  511-549    -D--N-----KLRPEFRKPA-DMPINGKSA-NGRVAASGGSL------HSYLAKQ

   WD40 Template    TG--E-----CLRTLSGHTS-GVTSVSFSP-DGKRLVSGSED------GTIKVWD