Input parameters:

  Query = T10F2.4 (Len=492)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (T10F2.4, Len=492):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGTGSAPRNVSGTSIPSLLKMLQ 80  
WD40-rpts                                                                                      

Query       81 DEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSE 160 
WD40-rpts                                                                                      

Query      161 AILAKLEEKSKSLTAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDIKGNLSLTGGIDKTVVLYDYEK 240 
WD40-rpts                                                (_______________WD 1______________)   

Query      241 EQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPVTDISLNASGDYILSASDDSYWAFS 320 
WD40-rpts      (_________________WD 2________________)   (_________________WD 3________________

Query      321 DIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSE 400 
WD40-rpts      )   (__________________WD 4__________________)   (_________________WD 5_________

Query      401 DGEVKLWDLRKLKNLKTFANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSGPVTGVRFGENARSLVT 480 
WD40-rpts      _______)   (________________WD 6________________)   (_________________WD 7______

Query      481 CSLDKSLRVFSF 492 
WD40-rpts      __________) 

7 WD40-repeats found in QUERY=T10F2.4 (Len=492):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   203-237      6.07  365.31  0.00074       17.5%     47.49
  WD 2:  Seg  5   241-279      9.49  506.53  9.3e-06       30.0%     57.40
  WD 3:  Seg  9   283-321      8.53  466.95  3.2e-05       22.5%     57.04
  WD 4:  Seg 13   325-366      8.20  453.55  4.8e-05       37.5%     57.46
  WD 5:  Seg 17   370-408     10.06  530.30  4.4e-06       42.5%     47.52
  WD 6:  Seg 20   412-449      4.27  290.90  0.00746       22.5%     48.93
  WD 7:  Seg 24   453-491      8.50  465.64  3.3e-05       30.0%     55.18

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  203-237    ----HTGI---HSTGT-PGITALDIKGNLSLTGGIDKTVVLYD
   WD 2  241-279    EQVMQTFK---GHNKK-INAVVLHPDNITAISASADSHIRVWS
   WD 3  283-321    SSSKAIID---VHQAP-VTDISLNASGDYILSASDDSYWAFSD
   WD 4  325-366    GKSLCKVSVEPGSQIA-VHSIEFHPDGLIFGTGAADAVVKIWD
   WD 5  370-408    QTVAAAFP---GHTAA-VRSIAFSENGYYLATGSEDGEVKLWD
   WD 6  412-449    LKNLKTFA---NEEKQPINSLSFDMTGTFLGIGGQK--VQVLH
   WD 7  453-491    WSEVVSLS---DHSGP-VTGVRFGENARSLVTCSLDKSLRVFS

   WD40 Template    GECLRTLS---GHTSG-VTSVSFSPDGKRLVSGSEDGTIKVWD