Input parameters:

  Query = W02D3.9 (Len=612)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (W02D3.9, Len=612):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKASYLETLDRIKDEHAEMSKHVNQQRSDIEKVALEKENMNRSYMTYAEVSNTLRSDLRKAEEINKRLQEFIMQSLAPQL 80  
WD40-rpts                                                     (________________________________

Query       81 SQDNQANCLAALEAFKTASPRENGNGAPALPPGFPPGAAGMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGGSSGG 160 
WD40-rpts      _________WD 1________________________________________)                          

Query      161 ASEAKKAKLEDPDDGELEIDVTNDDHPSTASNGGAANKNGRDSTNSVASSGASTPSIASNSRARQQQQPLAGLQGLEQMN 240 
WD40-rpts                            (_________________WD 2________________)     (_____________

Query      241 FLAGFNPNLLRQASAAGGFNFLNDPHAQARLAAAIGQIGSRPAYSFKIVDGGVPTPTSFPPDAQKGPGIPTGLKKKMELN 320 
WD40-rpts      ____WD 3________________)  (__________________WD 4_________________)   (________

Query      321 HGEVVCAATISRDNSRVYTGGKGCVKIWDVKESDISGATVVNRPPIASLDCLKENYIRSCKLFEDGNTLLIGGEASTVAL 400 
WD40-rpts      ________WD 5________________)          (___________________WD 6_________________

Query      401 WDLTTETKTLDLETDSQACYALAMSPDEKLLFACLADGNILIYDIHNKVKVGTLPGHQDGASCLDLSKDGTKLWSGGLDN 480 
WD40-rpts      _)   (_________________WD 7________________)   (_________________WD 8___________

Query      481 SVRCWDLAQRKEVAKHDFASQVFSLGCCPNDEWVAVGMENNYVEVLSTTGKEKYQLTQHESCVLSLKFAHSGKFFISTGK 560 
WD40-rpts      _____)(__________________WD 9_________________)  (_________________WD10_________

Query      561 DNALNAWRTPYGASLFQLKENSSVLSCDISFDDSLIVTGSGEKKATLYAVEY 612 
WD40-rpts      _______)   (________________WD11________________)   

11 WD40-repeats found in QUERY=W02D3.9 (Len=612):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    48-134      3.95  277.76  0.01119       12.5%     -22.67
  WD 2:  Seg  2   183-221      5.23  330.72  0.00217        7.5%     -4.07
  WD 3:  Seg  3   227-265      5.47  340.48  0.00160       17.5%     33.31
  WD 4:  Seg  6   268-308      5.35  335.55  0.00187       12.5%     27.96
  WD 5:  Seg  9   312-349      7.39  420.13  0.00014       27.5%     51.78
  WD 6:  Seg 14   360-402      7.86  439.15  7.5e-05       22.5%     47.05
  WD 7:  Seg 17   406-444      8.78  477.21  2.3e-05       25.0%     55.99
  WD 8:  Seg 21   448-486      9.87  522.45  5.6e-06       35.0%     57.11
  WD 9:  Seg 25   487-527      7.10  407.88  0.00020       17.5%     54.67
  WD10:  Seg 29   530-568      9.50  506.91  9.2e-06       30.0%     55.54
  WD11:  Seg 33   572-609      7.38  419.52  0.00014       27.5%     55.68

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   48-134    -AE---VSNTLRSDLRKAEEINKRLQEFIMQSLAPQLSQDNQANCLAALEAFKTASPREN-GNGAPAL--PPGFPPGAAGMLGMMPNMPFGMSP
   WD 2  183-221    -ND---D-----------------------------H-------------------PSTA-SNGGAAN--KNGRDSTNSVASSGASTPSIASNS
   WD 3  227-265    -QQ---P-----------------------------L-------------------AGLQ-GLEQMNF--LAGFNPNLLRQASAAGGFNFLNDP
   WD 4  268-308    -QA---R-----------------------------L-------------------AAAI-GQIGSRPAYSFKIVDGGVPTPTSFPPDAQKGPG
   WD 5  312-349    -GL---K-----------------------------K-------------------KMEL-NHGEVVC--AATISRDNSRVYTGG-KGCVKIWD
   WD 6  360-402    VVNRPPI-----------------------------A-------------------SLDC-LKENYIR--SCKLFEDGNTLLIGGEASTVALWD
   WD 7  406-444    -ET---K-----------------------------T-------------------LDLE-TDSQACY--ALAMSPDEKLLFACLADGNILIYD
   WD 8  448-486    -KV---K-----------------------------V-------------------GTLP-GHQDGAS--CLDLSKDGTKLWSGGLDNSVRCWD
   WD 9  487-527    LAQ---R-----------------------------K-------------------EVAKHDFASQVF--SLGCCPNDEWVAVGMENNYVEVLS
   WD10  530-568    -GK---E-----------------------------K-------------------YQLT-QHESCVL--SLKFAHSGKFFISTGKDNALNAWR
   WD11  572-609    -GA---S-----------------------------L-------------------FQLK-ENSS-VL--SCDISFDDSLIVTGSGEKKATLYA

   WD40 Template    TGE---C-----------------------------L-------------------RTLS-GHTSGVT--SVSFSPDGKRLVSGSEDGTIKVWD