Input parameters:

  Query = Y105E8A.8 (Len=449)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y105E8A.8, Len=449):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNTEESSSSQELEEKKPSLRAERCGIASLLSSLRSDHLASKIDELSTTEAAASEEIPEEIPENRPLNRKEKRKLQRMQEI 80  
WD40-rpts                   (_________________________________WD 1_____________________________

Query       81 DQEVKKKAQEPVEIAEIPTNLKNTFCDKATFNSYNAQFGYKSTENNNFVHFSIQNEQGNRALVASQDRFIRMYKIDETPE 160 
WD40-rpts      ____)(____________WD 2____________)_________________WD 3_________________)   (__

Query      161 VIWKHNTGNLVLDSCWENSGKGVFSSSKLRPIQLFDTENGSILGAYNGKDAGDNITAAMSIGQSGSSLIGGFKNKFQIWD 240 
WD40-rpts      _______________WD 4________________)   (__________________WD 5_________________)

Query      241 IEYTGDAIQHIKSFDNDYNTGTTGLPMSITPHPTMPDLFAAGGSSSLVAIYSLKWRNAVSTIEGSLKGYTNLHFSPDGLK 320 
WD40-rpts                  (_________________WD 6_________________)   (_________________WD 7___

Query      321 LYASERKGDIHCFDTRMNMLTQILKRDMTATHRTRFSIDKSGRLLFSGTSGGDVIVYDLHEYSEELQPAHVQNVASRCVP 400 
WD40-rpts      _____________)   (__________________WD 8_________________)          (___________

Query      401 CVDLKGKKLVLCSGERVYPDDKLLGDQDQEICMDHERSENSFQIFEIQN 449 
WD40-rpts      ___WD 9______________)                           

9 WD40-repeats found in QUERY=Y105E8A.8 (Len=449):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-85       5.34  335.41  0.00188        7.5%      6.56
  WD 2:  Seg  3    86-115      3.93  277.02  0.01145        5.0%     36.64
  WD 3:  Seg  6   115-154      9.28  498.05  1.2e-05       15.0%     54.88
  WD 4:  Seg 10   158-196      8.23  454.65  4.6e-05       17.5%     55.53
  WD 5:  Seg 14   200-240      7.00  403.61  0.00023       25.0%     54.03
  WD 6:  Seg 19   253-292      6.52  384.14  0.00041       12.5%     42.16
  WD 7:  Seg 22   296-334      9.86  522.00  5.7e-06       32.5%     47.10
  WD 8:  Seg 25   338-378      8.02  445.89  6.1e-05       27.5%     55.79
  WD 9:  Seg 30   389-422      4.35  294.18  0.00674       12.5%     30.41

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-85     EKKPSLRAERCGIASLLSSLRSDHLASK---IDELSTTEA--A-ASEEIPEEIPENRPLNRKEKRKLQRMQEIDQEVK
   WD 2   86-115    ---------KKA--------------QE---PVEIAEIPT--N-LKNTF-CDKATFNSYN------------------
   WD 3  115-154    NAQFGYKSTENN--------------NF---VHFSIQNEQ--G-NRALVASQDRFIRMYK------------------
   WD 4  158-196    -TPEVIWKHNTG--------------NL---VLDSCWENS--G-KGVFSSSKLRPIQLFD------------------
   WD 5  200-240    -GSILGAYNGKD--------------AGDNITAAMSIGQS--G-SSLIGGF-KNKFQIWD------------------
   WD 6  253-292    -SFDNDYNTGTT--------------GL---PMSITPHPT--MPDLFAAGGSSSLVAIYS------------------
   WD 7  296-334    -RNAVSTIEGSL--------------KG---YTNLHFSPD--G-LKLYASERKGDIHCFD------------------
   WD 8  338-378    -NMLTQILKRDM--------------TA---THRTRFSIDKSG-RLLFSGTSGGDVIVYD------------------
   WD 9  389-422    ----AHVQNVAS--------------RC---VPCVDLKGK--K---LVLCSGERVYPDDK------------------

   WD40 Template    TGECLRTLSGHT--------------SG---VTSVSFSPD--G-KRLVSGSEDGTIKVWD------------------