Input parameters:

  Query = Y110A7A.9b (Len=908)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y110A7A.9b, Len=908):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFWYPWKDISRDFLLVLHSSSTVVLWNTVTGEKVWNHTYSHVPLFDFTVDPFSLRNVIFSSSGNKVLVCSDIALSEPASS 80  
WD40-rpts                                    (_________________WD 1_________________)          

Query       81 GHLFQITSEDNSTTSTNTNIYLITYHKAYRNTVFIAINSGLYLVNPELMCCLARVPIESNIVSWMPTGRRDALFAVHSNG 160 
WD40-rpts             (________________WD 2________________)                                   

Query      161 ATTFRVTKFEPTEEKKPNASFSMDKVCQTECVRPMNNQRIVAAALCPTTQSTVSVLYQSGKLAFWQLSNGRLPLLYRSSF 240 
WD40-rpts                                (_________________WD 3_________________)              

Query      241 IEDVLEFNDNLSTKSIGELSLHQLSQMGSLSSGVTCVRMRPMDELTKVENDPFANTALGTLHLAAVGTNSGTVHLVDVFT 320 
WD40-rpts          (________________WD 4_______________)_______________WD 5________________)   

Query      321 SQIYRDFCVQPSLVKCLEWGGVYSLVTAGYNHSLSASQIVRNDVFITDIRTGLAKRIRPETDESPITIIRVSYYHCYLAI 400 
WD40-rpts              (_________________WD 6_________________)(___________________WD 7________

Query      401 AFQREPLEIWDLKGLRMLRKMSRSCPLIIDMAWSNKHHSIKTTESTLQSVYRENLVLLDSENRIYHITLRGLHVRDGKIV 480 
WD40-rpts      __________)   (_________________WD 8________________)                (__________

Query      481 NTQWKSASAQICAMAWKDDILAVGDVEGNLVVWDLGRRQSRQVRDVSHSRVHRMTFSRLAGDHTMAVLHSKEVTLWDTEA 560 
WD40-rpts      __________WD 9___________________)   (_________________WD10_________________)(__

Query      561 MTRIQSIRMDSSKLCLDADLCGLSPLVLSNDNTLRFVVSNTKNQPILEKEIPFLYKDDSMNNVRKHLEGSGSRKSSEDRS 640 
WD40-rpts      ________________WD11_________________)                                          

Query      641 SADKSEDSTLEDAIAWIDQNQRPQIETLEADLSKLQRERVVRRFIGDHFSADLLSIVIDRFAHSETEHLAPNLQMFWENG 720 
WD40-rpts                                                                                      

Query      721 AFKERESRVISVACAAEQAMERRLVEQAVVVGGSAKERVTDRLIVSADLRYASIKAALLVSCQDNEKAKSLIKLIATNLI 800 
WD40-rpts                                                                                      

Query      801 ASDLIEDGVELLFLVGAGGDACKYLQSQKLWTKSIVYAKMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEA 880 
WD40-rpts                                                                                      

Query      881 TSSADAILARLILRTTTSTPPLSSCPTP 908 
WD40-rpts                                  

11 WD40-repeats found in QUERY=Y110A7A.9b (Len=908):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    31-70       5.26  332.00  0.00209       12.5%     50.48
  WD 2:  Seg  8    88-125      4.38  295.51  0.00647        2.5%     34.47
  WD 3:  Seg 16   187-226      3.95  277.99  0.01111        7.5%     52.46
  WD 4:  Seg 20   245-281      4.42  297.26  0.00613        7.5%      7.94
  WD 5:  Seg 21   279-317      5.67  349.03  0.00123       12.5%     27.62
  WD 6:  Seg 25   329-368      5.09  324.85  0.00261       10.0%     36.14
  WD 7:  Seg 29   369-411      6.38  378.20  0.00050       17.5%     51.56
  WD 8:  Seg 33   415-453      4.82  313.60  0.00369       10.0%     47.55
  WD 9:  Seg 38   470-514      6.63  388.59  0.00036       20.0%     49.04
  WD10:  Seg 42   518-557      6.58  386.62  0.00038       17.5%     54.01
  WD11:  Seg 46   558-598      3.22  247.84  0.02810       15.0%     45.81

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-70     -GEKVWN-----HT---YSHVPLFDFTVDPFSLRNVIFSSSGNKVLVCS
   WD 2   88-125    SED--NS-----TT---STNTNIYLITYHK-AYRNTVFIAINSGLYLVN
   WD 3  187-226    -CQTECV-----RP---MNNQRIVAAALCPTTQSTVSVLYQSGKLAFWQ
   WD 4  245-281    ---LEFN-----DN---LSTKSIGELSLHQ-LSQMGSLSSGVTCVRMRP
   WD 5  279-317    -MRPMDE-----LT---KVENDPFANTALG-TLHLAAVGTNSGTVHLVD
   WD 6  329-368    VQPSLVK-----CL---EWGGVYSLVTAGY-NHSLSASQIVRNDVFITD
   WD 7  369-411    IRTGLAK--RIRPE---TDESPITIIRVSY-YHCYLAIAFQREPLEIWD
   WD 8  415-453    -LRMLRK-----MS---RSCPLIIDMAWSN-KHHSIKTTESTLQSVYRE
   WD 9  470-514    RGLHVRDGKIVNTQ---WKSASAQICAMAW-KDDILAVGDVEGNLVVWD
   WD10  518-557    -RQSRQV-----RD---VSHSRVHRMTFSRLAGDHTMAVLHSKEVTLWD
   WD11  558-598    TEAMTRI-----QSIRMDSSKLCLDADLCG-LSPLVLSN--DNTLRFVV

   WD40 Template    TGECLRT-----LS---GHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD