Input parameters:

  Query = Y111B2A.17 (Len=778)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y111B2A.17, Len=778):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIEEEFISASVNPRSHCLTACKTAPLVAYASSLQIAVQTIPKDDSEVGVIKSTSERRHQKPITVLKRLKSSEIVADEFV 80  
WD40-rpts       (_________________WD 1________________)(_______________________WD 2____________

Query       81 TGGVDSRVVLWKLRGEHVEYVADLTGCDGSVGSVCGCVEDGRKVVAAAWVSETSNGFHAWWTSSIGDLLNSTEIKLDHKA 160 
WD40-rpts      ___________)     (____________________WD 3___________________)   (______________

Query      161 FALCLDAISIQNSVLLAVGTSKRFVELYGESADKKSFSRLISVAGHTDWIHSIAFNDNPDHLLVASAGQDTYVRLWAIEP 240 
WD40-rpts      _____WD 4___________________)       (__________________WD 5_________________)(__

Query      241 ETDEKSENIREDSSTTPPDELTSSANLFSINYTPYRCSSHAVMQGHDDWVHSTVWSNDGRVLLTASSDKTCIIWKEIDNL 320 
WD40-rpts      ______________WD 6_______________)  (_________________WD 7________________)     

Query      321 WRDDVRLGIVGGGQAAGFFAAVFSSSLDLKDSGEKNAENVVISSSYFGGLHCWKSTDEQKTFWTALPMTGGHVGEVRDVD 400 
WD40-rpts          (______________________WD 8______________________)          (_______________

Query      401 WHRSDDGDSGFLMSVGQDQTTRVFAKNGRQQSYVEIARPQVHGHDMQCLSFVNPSIFVSGAEEKVFRAFRAPKSFVKSLE 480 
WD40-rpts      ___WD 9_________________)       (________________WD10________________)  (_______

Query      481 AISGVPTEKSFGDSDLAEFGACVPALGLSNKPMVEGETVDGEHWEEDAFRAAPVVLTSPPTEDTLQQNTLWPEQHKLYGH 560 
WD40-rpts      _________WD11________________)(_________________WD12________________)(__________

Query      561 GYEVYAVTANPTGNVLATACKSSHVEHSVVMLWSTSNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDRTAKLYTEKNG 640 
WD40-rpts      __________WD13___________________)   (_________________WD14________________)(___

Query      641 EVDGFDYDCVWTSGKQHTRIIWACDWIDDEHFVTASRDQKVIVWAESAGQTAPKATVKLDEPVTAIAAVSKDVIVAGLQT 720 
WD40-rpts      ___________________WD15_____________________)(___________________WD16___________

Query      721 GELIVLRFDSEGLHVIEKIGANRIPIDSAVLRLRFSKNGRKLAVATTDAKLRIFNVSQ 778 
WD40-rpts      ________)   (___________________WD17__________________)   

17 WD40-repeats found in QUERY=Y111B2A.17 (Len=778):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-40       4.39  295.91  0.00639       10.0%     51.10
  WD 2:  Seg  5    41-92       5.67  348.87  0.00124       15.0%     55.45
  WD 3:  Seg  9    98-142      5.07  324.04  0.00267       27.5%     52.71
  WD 4:  Seg 13   146-189      4.71  309.41  0.00420       10.0%     51.98
  WD 5:  Seg 17   197-237      7.61  429.01  0.00010       27.5%     56.44
  WD 6:  Seg 21   238-274      5.15  327.41  0.00241       10.0%     29.19
  WD 7:  Seg 24   277-315      8.76  476.70  2.3e-05       30.0%     54.82
  WD 8:  Seg 28   325-374      4.74  310.56  0.00406       20.0%     53.78
  WD 9:  Seg 33   385-425      6.53  384.52  0.00041       27.5%     47.17
  WD10:  Seg 36   433-470      5.34  335.05  0.00190       17.5%     47.32
  WD11:  Seg 40   473-510      4.97  319.85  0.00304       15.0%     31.49
  WD12:  Seg 43   511-549      5.27  332.33  0.00207       10.0%     34.70
  WD13:  Seg 47   550-594      7.96  443.34  6.6e-05       22.5%     52.41
  WD14:  Seg 51   598-636      9.08  489.58  1.6e-05       30.0%     57.53
  WD15:  Seg 55   637-685      5.35  335.48  0.00187       20.0%     42.36
  WD16:  Seg 58   686-729      3.71  267.89  0.01518        7.5%     48.04
  WD17:  Seg 62   733-775      6.34  376.51  0.00052       17.5%     56.83

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-40     KIE----------EEFISASV----NPRSH-----CL-TA----C--KT-----------AP----LVA-YAS------S-----LQIAVQT
   WD 2   41-92     IPK--DDSEVGVIKSTSERRH----QKPIT-----VL-KR----L--KS-----------SEIVADEFV-TGG-----VD-----SRVVLWK
   WD 3   98-142    -VE----------YVADLTGC----DGSVG-----SVCGC----V--ED-----------GR----KVV-AAAWVSETSN-----GFHAWWT
   WD 4  146-189    -GD----------LLNSTEIK----LDHKAFALCLDA-IS----I--QN-----------SV----LLA-VGT-----SK-----RFVELYG
   WD 5  197-237    -FS----------RLISVAGH----TDWIH-----SI-AF----NDNPD-----------HL----LVA-SAG-----QD-----TYVRLWA
   WD 6  238-274    -------------IEPETDEK----SENIR-----ED-SS----T--TP-----------PD----ELT-SSA-----NL-----FSINYTP
   WD 7  277-315    -CS----------SHAVMQGH----DDWVH-----ST-VW----S--ND-----------GR----VLL-TAS-----SD-----KTCIIWK
   WD 8  325-374    -VR----------LGIVGGGQ----AAGFF-----AA-VF----S--SSLDLKDSGEKNAEN----VVI-SSS-----YF-----GGLHCWK
   WD 9  385-425    -------------ALPMTGGH----VGEVR-----DV-DWHRSDD--GD-----------SG----FLM-SVG-----QD-----QTTRVFA
   WD10  433-470    -YV----------EIARPQVH----GHDMQ-----CL-SF----V---N-----------PS----IFV-SGA-----EE-----KVFRAFR
   WD11  473-510    -KS----------FVKSLEAI----SGVPT-----EK-SF----G---D-----------SD----LAE-FGA-----CV-----PALGLSN
   WD12  511-549    -KP----------MVEGETVD----GEHWE-----ED-AF----R--AA-----------PV----VLT-SPP-----TE-----DTLQQNT
   WD13  550-594    LWP----------EQHKLYGH----GYEVY-----AV-TA----N--PT-----------GN----VLA-TAC-----KSSHVEHSVVMLWS
   WD14  598-636    -WS----------KKSEIIGH----QLTVT-----QI-AW----N--PS-----------GT----RLL-TVS-----RD-----RTAKLYT
   WD15  637-685    EKNGEVDGFDYDCVWTSGKQH----TRIIW-----AC-DW----I---D-----------DE----HFV-TAS-----RD-----QKVIVWA
   WD16  686-729    ESA-------GQTAPKATVKL----DEPVT-----AI-AA----V--SK-----------DV----IVAGLQT-----GE-----LIVLRFD
   WD17  733-775    -LH----------VIEKIGANRIPIDSAVL-----RL-RF----S--KN-----------GR----KLA-VAT-----TD-----AKLRIFN

   WD40 Template    TGE----------CLRTLSGH----TSGVT-----SV-SF----S--PD-----------GK----RLV-SGS-----ED-----GTIKVWD