Input parameters:

  Query = Y18D10A.9 (Len=337)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y18D10A.9, Len=337):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRQIGEFYHQGEKDDTSRVWMTCWHHGGRILASCGDDKAVRVWSLVGEPDSKMRLECRTTLDDSHTRAVRSVAFSNDGK 80  
WD40-rpts      (____________________WD 1___________________)                (______________WD 2

Query       81 CLVSASFDASVVVYQQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSSILQPHTQDVK 160 
WD40-rpts      ______________)(___________________WD 3___________________)(____________________

Query      161 QVAWHPTEDLLVSCSYDSSIRFYRFDGEDWVTQQKIDGCHVGTVWSIAFDTEGHRLVTVGEDHCIQLFVRENIGSKSADQ 240 
WD40-rpts      WD 4___________________)(____________________WD 5___________________)           

Query      241 DTWKSVARYDVENTRWPLYSVAWNSTNDVIATGGGDCKIRLFKISSTPESPVIEHLGVVGRHELDVNHVAWNPNPKFSNL 320 
WD40-rpts          (_________________WD 6________________)(_______________________WD 7_________

Query      321 LTSASDDGTIRLWELEI 337 
WD40-rpts      _____________)   

7 WD40-repeats found in QUERY=Y18D10A.9 (Len=337):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-45       7.85  439.07  7.5e-05       22.5%     55.55
  WD 2:  Seg  6    62-95       8.77  476.90  2.3e-05       40.0%     46.43
  WD 3:  Seg  9    96-139      8.83  479.58  2.1e-05       27.5%     56.47
  WD 4:  Seg 13   140-184      8.83  479.55  2.1e-05       32.5%     53.93
  WD 5:  Seg 17   185-229      8.29  457.07  4.3e-05       27.5%     51.78
  WD 6:  Seg 21   245-283      7.60  428.44  0.00010       12.5%     55.10
  WD 7:  Seg 25   284-334      8.02  445.84  6.1e-05       37.5%     54.60

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-45     ML--------RQIGEFYHQGEKDDTSRVWMTCWHHGGR---ILASCGDDKAVRVWS
   WD 2   62-95     -------------------LDDSHTRAVRSVAFSNDGK---CLVSASFDASVVVYQ
   WD 3   96-139    QE--------D-GEFAEVNKLEGHESEVKCAVFSKSDE---FLATCSRDKSVWFWQ
   WD 4  140-184    QD--------EDEDFSVSSILQPHTQDVKQVAWHPTED---LLVSCSYDSSIRFYR
   WD 5  185-229    FD---GEDWVT-----QQKIDGCHVGTVWSIAFDTEGH---RLVTVGEDHCIQLFV
   WD 6  245-283    -S--------V-----ARYDVENTRWPLYSVAWNSTND---VIATGGGDCKIRLFK
   WD 7  284-334    ISSTPESPVIE-----HLGVVGRHELDVNHVAWNPNPKFSNLLTSASDDGTIRLWE

   WD40 Template    TG--------E-----CLRTLSGHTSGVTSVSFSPDGK---RLVSGSEDGTIKVWD