Input parameters:

  Query = Y39A1A.1c (Len=354)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y39A1A.1c, Len=354):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTLNHASVTLDHSAFAIADKDGFKMYQLNPLHFRMYKDYVIKVGPVRLVKQDGNSRRIIYVSALAGGRFAQNNLMIFDV 80  
WD40-rpts                                       (____________________WD 1____________________) 

Query       81 ARNEEYFEITTPSRYGPITNIHVSPNRLVALNPNRMFVWTYPDDIKQIRSEDIRSNPKGISAMSYDPTTAACYLAYPGFK 160 
WD40-rpts      (_________________WD 2_________________)(_____________________WD 3______________

Query      161 TGSVQIMHLNALTARESKSPIVIEAHLTDIAQVALNCQGTLVATGSTKGTVIRVFDARTKGPLYELRRGTVQAHLQCMAF 240 
WD40-rpts      _______)        (_________________WD 4_________________)    (_________________WD

Query      241 SPCSSYLAVASDKGTLHMFGIRDAEPQKKKNVLERSRGSSSIVKIQLDRPVMAIGFGKKTPKNLQSIIAICADATYWRHE 320 
WD40-rpts       5_________________)      (_________________WD 6________________)(______________

Query      321 FYKDNTGNFTSHFGSYDELIEVANDSSFFRTPVE 354 
WD40-rpts      ___WD 7________________)          

7 WD40-repeats found in QUERY=Y39A1A.1c (Len=354):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    34-79       3.93  276.91  0.01149       12.5%     51.51
  WD 2:  Seg  8    81-120      3.44  256.59  0.02148       15.0%     43.68
  WD 3:  Seg 12   121-168      3.42  255.76  0.02204       10.0%     27.92
  WD 4:  Seg 16   177-216      7.41  420.72  0.00013       25.0%     51.53
  WD 5:  Seg 20   221-260      5.76  352.74  0.00110       22.5%     56.43
  WD 6:  Seg 24   267-305      5.75  352.14  0.00112       15.0%     31.98
  WD 7:  Seg 26   306-344      3.37  253.86  0.02336       17.5%     39.19

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   34-79     -FR---MYKDYVIKVG-------P-VRLVKQDGNSR---RII-YVSALAGGRFAQNN-LMIFD
   WD 2   81-120    ARNEEYFEITTPSRYG-------P-ITNIHVSPNRL---VAL-N----------PNR-MFVWT
   WD 3  121-168    YPD---DIKQIRSEDIRSNPKGIS-AMSYDPTTAAC---YLAYPGFK-------TGS-VQIMH
   WD 4  177-216    -SK---SPIVIEAHLT-------D-IAQVALNCQGT---LVA-TGST-------KGTVIRVFD
   WD 5  221-260    -GP---LYELRRGTVQ-------AHLQCMAFSPCSS---YLA-VASD-------KGT-LHMFG
   WD 6  267-305    -QK---KKNVLERSRG-------S-SSIVKIQLDRP---VMA-IGFG-------KKT-PKNLQ
   WD 7  306-344    -------SIIAICADA-------T-YWRHEFYKDNTGNFTSH-FGSY-------DEL-IEVAN

   WD40 Template    TGE---CLRTLSGHTS-------G-VTSVSFSPDGK---RLV-SGSE-------DGT-IKVWD