Input parameters:

  Query = Y39G10AR.9a (Len=401)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y39G10AR.9a, Len=401):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAETAQNPSKNIDETLSIQHDWHLNLREPVSQFYLGIKKFEATKTEFFQVQITKLVDEYGFAVMPEEGSIKSSDFTDVS 80  
WD40-rpts                          (__________________WD 1_________________)(________________WD

Query       81 LDEHKNLHVTFQGRTTIFVGPTSEQNLRGLQSAPRSFDVSCTGSTFVAADSSGKLIIANSRTAETLTELTGHTMDIYRCM 160 
WD40-rpts       2________________)(_________________WD 3_________________)   (_________________

Query      161 YFPSGLVVIGGGMDMAIRVWAVDKVPAQKTFVGHTKAVTGFGIIGVGREFLSCSNDGTVRFWSCKNAAPTETWSFEKGKC 240 
WD40-rpts      WD 4________________)   (_________________WD 5________________)   (_____________

Query      241 IDMAMSVDDSRFAVICENNFLSAIDLHGDKIRRDIQLPSVPTALCFSGDEGGKAVFVGFEDGHVAAYNVSDRRLIGEIVT 320 
WD40-rpts      ____WD 6________________)  (__________________WD 7_________________)   (________

Query      321 KKGSVTCLKYYCNRLIASFTTGNVLAFPILSLPTSSSIISAEYELTGADCEPVYDMAIYQKNIYTCCRDGKIRTYKAQWS 400 
WD40-rpts      ________WD 8_______________)           (________________WD 9_______________)    

Query      401 L 401 
WD40-rpts       

9 WD40-repeats found in QUERY=Y39G10AR.9a (Len=401):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-61       4.86  315.44  0.00349        5.0%     35.11
  WD 2:  Seg  5    62-99       6.69  391.05  0.00033       10.0%     36.91
  WD 3:  Seg  9   100-139      9.61  511.72  7.9e-06       20.0%     48.44
  WD 4:  Seg 13   143-181      9.99  527.44  4.8e-06       32.5%     54.41
  WD 5:  Seg 17   185-223      9.94  525.30  5.2e-06       32.5%     54.37
  WD 6:  Seg 21   227-265      8.55  467.87  3.1e-05       17.5%     55.06
  WD 7:  Seg 25   268-308      7.13  409.12  0.00019       32.5%     53.83
  WD 8:  Seg 29   312-348      6.80  395.72  0.00029       10.0%     54.56
  WD 9:  Seg 34   360-396      4.78  312.03  0.00388       12.5%     45.70

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-61     HDWHLNLREPVSQFYLGIKKFEAT--KTEFFQVQITKLVDEYG
   WD 2   62-99     --FAVMPEE-GSIKSSDFTDVSLD--EHKNLHVTFQGRTTIFV
   WD 3  100-139    GPTSEQNLR-GLQSAPRSFDVSCT--GSTFVAADSSGKLIIAN
   WD 4  143-181    -AETLTELT-GHTMDIYRCMYFPS--GLVVIGGGMDMAIRVWA
   WD 5  185-223    -VPAQKTFV-GHTKAVTGFGIIGV--GREFLSCSNDGTVRFWS
   WD 6  227-265    -AAPTETWS-FEKGKCIDMAMSVD--DSRFAVICENNFLSAID
   WD 7  268-308    -GDKIRRDI-QLPSVPTALCFSGDEGGKAVFVGFEDGHVAAYN
   WD 8  312-348    -RRLIGEIV-TKKGSVTCLKYYCN--R--LIASFTTGNVLAFP
   WD 9  360-396    -SAEYELTG-ADCEPVYDM--AIY--QKNIYTCCRDGKIRTYK

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSPD--GKRLVSGSEDGTIKVWD