Input parameters:

  Query = Y43F4B.9a (Len=309)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y43F4B.9a, Len=309):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRSKSVKLSNRPAFARRIPSEDTSRACVSTYLLDTSSDTRSGSLCILKIDEADGLQLENEISTSAGVFRFDFRNPSTIVA 80  
WD40-rpts      (_____________________WD 1_____________________)   (_________________WD 2_______

Query       81 ALTDGSLVVQKIEEPVSSETTPVSSDMLLDLGLSDSSLTITTDNKGHAYIVDLNTSLIVSTWLAHSLPYVPGEGCEVWSC 160 
WD40-rpts      __________)   (________________WD 3________________)          (_________________

Query      161 AISKDAQTVVTGGEDGSMKLWDARSRTQTGQSKIFEAGVVFVDFPASNEDQILTGSYDEHVRIFDRRNLKTVLKEKKLSG 240 
WD40-rpts      WD 4_________________)   (_________________WD 5_________________)   (___________

Query      241 GVWNIEQVGSEYCTSCMYGGYSILNSDTLDIVHENRDVGSNLLYGATKMSANSVLFCTFNDYLAVLDEY 309 
WD40-rpts      _____WD 6_______________)(___________________WD 7__________________) 

7 WD40-repeats found in QUERY=Y43F4B.9a (Len=309):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-48       4.70  308.68  0.00430        5.0%     23.43
  WD 2:  Seg  5    52-91       6.10  366.56  0.00071       15.0%     46.33
  WD 3:  Seg  9    95-132      6.50  383.00  0.00043       10.0%     48.68
  WD 4:  Seg 14   143-182     10.75  558.63  1.8e-06       35.0%     43.07
  WD 5:  Seg 17   186-225      7.87  439.70  7.4e-05       20.0%     47.84
  WD 6:  Seg 20   229-265      5.74  351.82  0.00113        7.5%     53.43
  WD 7:  Seg 24   266-308      6.10  366.58  0.00071        5.0%     47.56

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-48     --M---RSKSVKLSNRPAFARRIPS-EDTSRACVSTYLLDTSSDTRSGSLCILK
   WD 2   52-91     -AD---GLQLENEISTSAGVFRFDFRNPSTIV----------AALTDGSLVVQK
   WD 3   95-132    -PV---SSETTPVSSDMLLDLGLSD-SSLTIT----------TDN-KGHAYIVD
   WD 4  143-182    LAH---SLPYVPGEGCEVWSCAISK-DAQTVV----------TGGEDGSMKLWD
   WD 5  186-225    -RT---QTGQSKIFEAGVVFVDFPASNEDQIL----------TGSYDEHVRIFD
   WD 6  229-265    -LK---TVLKEKKLSGGVWNIEQVG-SE--YC----------TSCMYGGYSILN
   WD 7  266-308    SDTLDIVHENRDVGSNLLYGATKMS-ANSVLF----------CTFNDYLAVLDE

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP-DGKRLV----------SGSEDGTIKVWD