Input parameters:

  Query = Y44E3A.6a (Len=841)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y44E3A.6a, Len=841):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVDSHGLQSPDVVVEKYTISREKSSIGFEIGNNVTVQLNAPSDVDNGRERDSSNAHTKVIMDHKGDIQYLRGRILTSNGP 80  
WD40-rpts                                                                   (________________WD

Query       81 IVGFRSIHESVGESMNLINLQTKQRHRFKDFPFRTIDLAFAQHHKYLAVLNADLSLVVFEVSDRCDPKKYLSIVNWPSYQ 160 
WD40-rpts       1________________)  (_________________WD 2________________)                    

Query      161 SQGNEDQPKLSWCPYIQGEDEDDETIHMIAVYLGRQLYIVNLGVLKEAGLGDTIEFEDAKKEDGGLFCHYFSDQPDKKNL 240 
WD40-rpts                               (_________________WD 3_________________)   (___________

Query      241 RIASVCISPDSTAVAIAKTEGPVQFFTFNEENNTLTAAHCFEPRGFARNGLIDDLIFLDDLTPDRRKSLPFWRSCVVVSN 320 
WD40-rpts      ______WD 4________________)                                                     

Query      321 DGHKVALYECQSWKCLGRIRFETTRAINKFVSISDPAANFVHLLDVDGMNVFTIEIRNPFRTDEQPRFVGITQTSFCHSI 400 
WD40-rpts                                                                                      

Query      401 FSIAPISSNTFENAEDSGDDLFNNDSNDEESGDESDGTESDTRMKHTKIKRHFVAMGKRSMVELQLTLKQHIPSPVGTVA 480 
WD40-rpts                                                                                      

Query      481 AESSQKEPSPSVYVDTETPEHQQLQNSGGLLMKVAPQTSSIDVESVNQKLDDVIAALARIEADRKNSNEQMVQQIVTALD 560 
WD40-rpts                                                                                      

Query      561 ENIRMREGYMLNRIEQVCENGRLDTIAAIRNGLANLNGNMETFVRDQGVETAEYISQRVGSTTRNALAECILPSFERSCE 640 
WD40-rpts                                                                                      

Query      641 VLFERLNEHFRHGINEYLATTSQMIQGTAMATMQMAAQQQQQKGELERIALLRMIETNPEEAVEAALNKADMSILEFVCS 720 
WD40-rpts                                                                                      

Query      721 KINPEKIVIPGNTKLSQKCLVSLVSQFTATLSSDRDLKFKWIELVIPEIDMSDPEIIHVVTPVAQKLVNALQELMENTAD 800 
WD40-rpts                                                                                      

Query      801 EPVRRYVRLLYQMTRSSLLQPPTPSQRTSALSKFLSDHSQQ 841 
WD40-rpts                                               

4 WD40-repeats found in QUERY=Y44E3A.6a (Len=841):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    62-99       4.00  280.08  0.01042        7.5%     20.96
  WD 2:  Seg  8   102-140      6.46  381.51  0.00045       12.5%     45.04
  WD 3:  Seg 14   186-225      3.38  254.47  0.02293       10.0%     14.44
  WD 4:  Seg 16   229-267      6.05  364.57  0.00076       15.0%     40.10

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   62-99     -DHKGDIQYLRGRILTSN-GPIVGFRSIHESVGESMNLIN
   WD 2  102-140    TKQRHRFKDFPFRTIDLA-FAQHHKYLAVLNADLSLVVFE
   WD 3  186-225    IHMIAVYLGRQLYIVNLGVLKEAGLGDTIEFEDAKKEDGG
   WD 4  229-267    HYFSDQPDKKNLRIASVC-ISPDSTAVAIAKTEGPVQFFT

   WD40 Template    GECLRTLSGHTSGVTSVS-FSPDGKRLVSGSEDGTIKVWD