Input parameters:

  Query = Y44F5A.1 (Len=383)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y44F5A.1, Len=383):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLVEFDNPPLCMKSNKDGSRLVVGFVDGSIRFYDTQQHEEEFQEIWKFQTKSSIRGVDLDEHKKRVYAVTKNRSLCVFDI 80  
WD40-rpts      (______________WD 1______________)(____________________WD 2___________________)(

Query       81 DTGKRVRCILKCHRSVPTAICTLPPTALKSQQLATADESGEVKTWNLDPEVASENANIRKWQEQDEDINDLKVDVKSNLL 160 
WD40-rpts      _____________________WD 3____________________)        (________________WD 4_____

Query      161 ATSSDGTLGAYDLRKAKLKMRSELMHSELYSVCGTNRSVYVGGEDGYVEVFNLNEYGNLLERVESGFEMGVNGIVELRSG 240 
WD40-rpts      ___________)(_________________WD 5_________________)(___________________WD 6____

Query      241 LLGLTSQGSNRMRLLNVQPSKRLGYAGYHGDEKSDDDGIDAITISTDKSTVFTMISMSCTIKKWDMGPIIDEIPILRAQD 320 
WD40-rpts      _______________)   (____________________WD 7____________________)               

Query      321 AKSKKMRKTEGFFDGLVGPKNDSDSDDDDEPKSKKRRNDEDSDEEIDEEEQEEDDEEEEEDSD 383 
WD40-rpts                                                                     

7 WD40-repeats found in QUERY=Y44F5A.1 (Len=383):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       7.91  441.50  7.0e-05       27.5%     43.04
  WD 2:  Seg  4    35-79       7.22  412.93  0.00017       17.5%     56.94
  WD 3:  Seg  8    80-126      6.99  403.55  0.00023       27.5%     49.71
  WD 4:  Seg 11   135-172      6.72  392.32  0.00032       17.5%     47.15
  WD 5:  Seg 15   173-212      7.01  404.39  0.00022       15.0%     51.57
  WD 6:  Seg 19   213-256      8.02  446.02  6.1e-05       17.5%     53.96
  WD 7:  Seg 23   260-305      6.46  381.33  0.00045       27.5%     57.16

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     -----------M---LVEFDN------PPLCMKSNK----DGSRLVVG-FVDGSIRFYD
   WD 2   35-79     TQQHEEEFQEIW---KFQTKS------SIRGVDLDE----HKKRVYAV-TKNRSLCVFD
   WD 3   80-126    IDT-----GKRVRCILKCHRS------VPTAICTLPPTALKSQQLATA-DESGEVKTWN
   WD 4  135-172    -NA-----NIRK---WQEQDE------DINDLKVDV----KSNLLATS-S-DGTLGAYD
   WD 5  173-212    LRK-----AKLK---MRSELM------HSELYSVCG----TNRSVYVG-GEDGYVEVFN
   WD 6  213-256    LNE-YGNLLERV---ESGFEM------GVNGIVELR----SGLLGLTS-QGSNRMRLLN
   WD 7  260-305    -SK-----RLGY---AGYHGDEKSDDDGIDAITIST----DKSTVFTMISMSCTIKKWD

   WD40 Template    TGE-----CLRT---LSGHTS------GVTSVSFSP----DGKRLVSG-SEDGTIKVWD