WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: Y45F10B.10 [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = Y45F10B.10 (Len=1592) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (Y45F10B.10, Len=1592): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MFRGKGQQQVSSTDNIKAMMTAAIGNKLEKRLPLVSTIFVVGNDEEEFNIERRTLWQDVLPDLQNLAFQSNFDLEFCDVP 80
WD40-rpts
Query 81 LENGELTNSVAEHVLQMWKDNPRSWIVLLLGNRYGNVSVPTSLRKEEYESIRSSIFEENGNVRVFEKAYTINRNGAVEEY 160
WD40-rpts
Query 161 RLVPSAIKDKKQLAEIIKALQAGAKAAHEEGSINQVHEQRQNRFFSSPLETFVRSILQVSPCRCLFLLRKFDQLVADPNS 240
WD40-rpts
Query 241 PNAFLETNDQNSRKIEDLKNEITLKMNDRVMTHVLRPESTDINYFFNSRDGDKYREKIARQFNEKLKNHLADINPPVRPE 320
WD40-rpts
Query 321 PPKSPMVLAANEARTHQEFLENQLALGNLKRDYDKRLDELASVKVNRGVFLIQGTDLCGKTQALCRLYHKISDKDAYKVI 400
WD40-rpts
Query 401 FFTNLTYSSNFAHEAWRTICLNICSISNIDPKEVLEHFKLGGILKSLEELVQKADKPVCIFIDDVHLLKFGHLLSQIGRR 480
WD40-rpts
Query 481 TETAPDNLSLFMTSSNVAPVNAVFAVTQTVNVDVISENEVVGMVQKMAEKVDKKLTNEQISAIRPLMAAKDGILIAKSFT 560
WD40-rpts
Query 561 HEILFNGNSSMKGGMDGRMTRIEKEFGKLAVGNAVKFIAASSHGLTRLEIHDAISADREVLEEMNMSIVYSLLTLDGIIE 640
WD40-rpts
Query 641 ALGPILRKVIIDDRQIIGIAHSGLISWLRNRYLTSSQDIRSAHLQLSDLFADLLIDNEQSPRHEIAYQSFSQGIKRDNGS 720
WD40-rpts
Query 721 PNFRRLRLLWYHCLHSGNLDRLKELSLCHFEYVDYVTRYFGISHLLSLYEECATQILHHDLQVISEQVLVPALVTMARDS 800
WD40-rpts
Query 801 EQLAAEVIGRLRFTRHENSHFLNSLVDQAMSWVDLYNRQPLLVPLTCWISPPATKVCRSFTLKDWKPGNTVLTLSANHQY 880
WD40-rpts (_____________________WD 1_____
Query 881 ILISGNQSDPGVIYAYHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPTMSLTHHTAKVTCAI 960
WD40-rpts ________________) (_________________WD 2________________) (_________________
Query 961 LTSDDQYLITASADSSAKMIKLETGEVMRSFNDHTGSVVSLQLTSNNQFLITGSGDFVVQMWDVTNGKCISRMGGLMAPV 1040
WD40-rpts WD 3________________) (_________________WD 4________________) (_____________
Query 1041 STLAITSNDAFVVVACEDETLKVFSTVGGQELHELMGHEGKVNSLVCAQDDCQLFAATKSKVFCYDIHNGQMIDVLDTAQ 1120
WD40-rpts ____WD 5________________) (________________WD 6________________) (__________
Query 1121 PFPICSLKISSDNYFLISPCGPKVTIWNVTKRNHDAHDVHADKEGFLTAVALSNDDKYAACGTNNGIVALWDLEVCQCVF 1200
WD40-rpts _______WD 7________________) (_________________WD 8________________)(_______
Query 1201 TTIQNKGDPITCIRYSVDSQYCISGNQAGCILILDAQNGGVVRELFMHSSEVLSIMSLVHNKMISCDIQGKMVIWELFGD 1280
WD40-rpts ____________WD 9__________________) (________________WD10________________) (_
Query 1281 DDTPEMVATGVKPPIFVPPTGRIMVGHCSLSNKEMKIWAFPEEGPPVTRAKLSHSDEITCFATSPKGGNFIATGSRDMSL 1360
WD40-rpts _________________WD11_________________) (_________________WD12______________
Query 1361 KIWQIDKGFLTQVLVGHENVVTCCCISFDERLVVSGARDEKIIVWNVQSGDMVCTVNTTAAITSLSMTGDSTVVFSTTED 1440
WD40-rpts ___) (_________________WD13________________)(__________________WD14___________
Query 1441 GWVETWSTTKGRLLSTFNAHRPIKKLINSYESHRMLLLLENCAQLPILCLHNTPAVGVEATRRRSARAQSVSSASNEPVA 1520
WD40-rpts ______) (_________________WD15________________)
Query 1521 STSAGEIKKDPILSSNNGGNAQSAPRATAPKPTFDMLERSKSRTSLIEKDRTTTLTQSNAPPPQKSNMCTLL 1592
WD40-rpts (_________________WD16_________________)
 16 WD40-repeats found in QUERY=Y45F10B.10 (Len=1592): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 15 850-897 5.15 327.57 0.00239 20.0% 40.94 WD 2: Seg 19 901-939 9.24 496.28 1.3e-05 37.5% 56.84 WD 3: Seg 23 943-981 8.48 465.05 3.4e-05 25.0% 58.39 WD 4: Seg 27 985-1023 9.48 506.10 9.4e-06 32.5% 57.46 WD 5: Seg 31 1027-1065 8.74 475.89 2.4e-05 25.0% 57.98 WD 6: Seg 35 1069-1106 7.19 411.48 0.00018 25.0% 56.09 WD 7: Seg 39 1110-1148 5.37 336.59 0.00181 20.0% 53.80 WD 8: Seg 43 1154-1192 7.84 438.67 7.6e-05 22.5% 48.26 WD 9: Seg 46 1193-1235 8.07 448.07 5.7e-05 25.0% 52.83 WD10: Seg 50 1239-1276 6.96 402.32 0.00024 27.5% 54.92 WD11: Seg 54 1279-1319 5.55 343.76 0.00145 17.5% 43.65 WD12: Seg 58 1325-1364 7.22 413.08 0.00017 27.5% 54.55 WD13: Seg 62 1368-1406 8.99 485.98 1.8e-05 37.5% 56.59 WD14: Seg 66 1407-1447 7.44 422.01 0.00013 25.0% 55.66 WD15: Seg 70 1451-1489 6.49 382.78 0.00043 12.5% 56.40 WD16: Seg 75 1538-1577 3.13 243.82 0.03177 15.0% 11.44Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 850-897 SPP-A---TKVCRSFTL-KDWKPGNTVLTLSAN-HQYILISGN--QSDPGVIYAYH WD 2 901-939 -EQ-L---IG-----TF-KGHTAAVTCLCSSND-SSLFV---S--TSFDKTVNVWV WD 3 943-981 -ST-P---TM-----SL-THHTAKVTCAILTSD-DQYLI---T--ASADSSAKMIK WD 4 985-1023 -GE-V---MR-----SF-NDHTGSVVSLQLTSN-NQFLI---T--GSGDFVVQMWD WD 5 1027-1065 -GK-C---IS-----RM-GGLMAPVSTLAITSN-DAFVV---V--ACEDETLKVFS WD 6 1069-1106 -GQ-E---LH-----EL-MGHEGKVNSLVCAQD-DCQLF---A--ATKS-KVFCYD WD 7 1110-1148 -GQ-M---ID-----VLDTAQPFPICSLKISSD-NYFLI---S--PCGP-KVTIWN WD 8 1154-1192 -HD-A---HD-----VH-ADKEGFLTAVALSND-DKYAA---C--GTNNGIVALWD WD 9 1193-1235 LEV-CQCVFT-----TI-QNKGDPITCIRYSVD-SQYCI---S--GNQAGCILILD WD10 1239-1276 -GG-V---VR-----EL-FMHSSEVLSIMSLVH-NK-MI---S--CDIQGKMVIWE WD11 1279-1319 -GD-D---DT-----PE-MVATGVKPPIFVPPT-GRIMV---GHCSLSNKEMKIWA WD12 1325-1364 -PP-V---TR-----AK-LSHSDEITCFATSPKGGNFIA---T--GSRDMSLKIWQ WD13 1368-1406 -GF-L---TQ-----VL-VGHENVVTCCCISFD-ERLVV---S--GARDEKIIVWN WD14 1407-1447 VQSGD---MV-----CT-VNTTAAITSLSMTGD-STVVF---S--TTEDGWVETWS WD15 1451-1489 -GR-L---LS-----TF-NAHRPIKKLINSYES-HRMLL---L--LENCAQLPILC WD16 1538-1577 -GG-N---AQ-----SA-PRATAPKPTFDMLER-SKSRT---S-LIEKDRTTTLTQ WD40 Template TGE-C---LR-----TL-SGHTSGVTSVSFSPD-GKRLV---S--GSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |