Input parameters:

  Query = Y45F10D.7 (Len=924)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y45F10D.7, Len=924):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKRIQSELFAPYRFLGVVTGDVAPSIRSTFVAKKSALSVLCPIDNVIMQYNGKKLRAIGMSEPLSDKVSAVASSSTSVFA 80  
WD40-rpts                        (______________WD 1_____________)   (_________________WD 2____

Query       81 AHGTNITSLAFCRDIKDSIDLGAKIKIMTLIGTQLIAVDISSGIHVIDTSEGGLQMSLLMEGSDDFEITAICHPSTYLNK 160 
WD40-rpts      ____________)(_______________WD 3______________)(____________________WD 4_______

Query      161 IVVGSSTGRMKIINFRTGKVIHEFQRSFDSRITIIEQTTALDVVVVGLENGEVMLFNVKMDKIITSFRHDAKITNVAFRD 240 
WD40-rpts      _____________)   (_________________WD 5_________________)  (_________________WD 

Query      241 DGESTMVTADKNGTMAVWDLEKQELIGKITGIHSDEINCLYFVPGEPIMLSASLDNSLRLWIFDSADGMPRELVRLEGHS 320 
WD40-rpts      6_________________)   (_________________WD 7_________________)       (__________

Query      321 KPCASIKFVGKDHVLSAGKDGSIRKYDVSSLTMRQKLGTVGQGVKLNKEVQNVAEMAFGWQREAAWNNVFCRQVNDTKIT 400 
WD40-rpts      ______WD 8________________)                (_________________WD 9_______________

Query      401 TWQTRNNTSGAFTLEHDRFKKKVDFIDANATALCVSPCGNFVFIGYSTGHIDQFNAQSGRHVHSFTASTTVKKSKKSKNP 480 
WD40-rpts      __)             (_________________WD10________________)                         

Query      481 RKGPTKTNGDIHNDTPAADSPITSLSVDQRGKELMSTDAQGHILFWSLSTKAINAKMFKKDVRLGICAPCPSNSLVALVA 560 
WD40-rpts              (_________________WD11________________)   (___________________WD12______

Query      561 IAENGKESVILVDTVCHRVARAFETVGNKVNAMTFSSDGKWLLVADNDSYIRVFDVATSQLIDVLLFSKPCISMSYNETG 640 
WD40-rpts      ____________)   (_________________WD13________________)(__________________WD14__

Query      641 QYLATVHEGERAVYTWANKVLFVAHINIRAHPADYLPSWSMISTEEGGTCDIDDDEDDLTTLMDQDIKAMKELQIDENLV 720 
WD40-rpts      ________________)                          (___________________________WD15_____

Query      721 TFSGLPSSRWANLPDLALIKERNKPTDAVKKIKQAPFFLSASATLDGFEFETENIGDEMDGDSRYITSKRNLLELESSFT 800 
WD40-rpts      _____________________)                                                          

Query      801 TLLRNAKTRDHLLDAFKTLQNMSLSAIDFQIRTLNPKTIPIFFRMLLEVLKTKTNFELVQAYAATATKIHRTIMWNASEG 880 
WD40-rpts                                                                                      

Query      881 ASEHEELTEVLEEMAQVQMESWNEMENLFVENMAVVQWIKNALL 924 
WD40-rpts                                                  

15 WD40-repeats found in QUERY=Y45F10D.7 (Len=924):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    19-51       3.27  249.67  0.02657       15.0%     47.72
  WD 2:  Seg  5    55-93       3.78  270.89  0.01384       10.0%     35.35
  WD 3:  Seg  9    94-128      3.30  251.15  0.02539       15.0%     41.99
  WD 4:  Seg 12   129-174      4.80  313.10  0.00375       22.5%     58.79
  WD 5:  Seg 16   178-217      5.69  349.73  0.00120       17.5%     59.55
  WD 6:  Seg 20   220-259      6.39  378.60  0.00049       32.5%     55.64
  WD 7:  Seg 24   263-302      6.88  399.00  0.00026       22.5%     56.38
  WD 8:  Seg 28   310-347      6.04  364.08  0.00077       27.5%     53.34
  WD 9:  Seg 33   364-403      3.83  272.77  0.01306        7.5%     17.41
  WD10:  Seg 37   417-455      6.90  399.63  0.00026       17.5%     53.24
  WD11:  Seg 43   489-527      8.15  451.43  5.1e-05       30.0%     43.24
  WD12:  Seg 46   531-573      4.91  317.41  0.00328        5.0%     46.98
  WD13:  Seg 50   577-615      8.78  477.42  2.3e-05       30.0%     57.77
  WD14:  Seg 54   616-657      4.42  297.11  0.00615       17.5%     50.59
  WD15:  Seg 60   684-742      3.42  256.10  0.02181        7.5%     17.48

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-51     TG---------------------D-VAPSIRSTFVAKKS--A-LSV----LCPI-DNVIMQYN-------
   WD 2   55-93     -LR------------A-IGMSE-P-LSDKVSAVASSSTS--V-FAA----HGTN-ITSLAFCR-------
   WD 3   94-128    ------------------DIKD-S-IDLGAKIKIMTLIG--T-QLI----AVDI-SSGIHVID-------
   WD 4  129-174    TSE--------GGLQM-SLLME-G-SDDFEITAICHPSTYLN-KIV----VGSS-TGRMKIIN-------
   WD 5  178-217    -GK------------V-IHEFQRS-FDSRITIIEQTTAL--D-VVV----VGLE-NGEVMLFN-------
   WD 6  220-259    -MD------------K-IITSF-R-HDAKITNVAFRDDG--ESTMV----TADK-NGTMAVWD-------
   WD 7  263-302    -QE------------L-IGKIT-GIHSDEINCLYFVPGE--P-IML----SASL-DNSLRLWI-------
   WD 8  310-347    -PR------------E-LVRLE-G-HSKPCASIKFVGKD--H--VL----SAGK-DGSIRKYD-------
   WD 9  364-403    VKL------------N-KEVQN-V-AEMAFGWQREAAWN--N-VFC----RQVN-DTKITTWQ-------
   WD10  417-455    -DR------------F-KKKVD-F-IDANATALCVSPCG--N-FVF----IGYS-TGHIDQFN-------
   WD11  489-527    -GD------------I-HNDTP-A-ADSPITSLSVDQRG--K-ELM----STDA-QGHILFWS-------
   WD12  531-573    -KA------------I-NAKMF-K-KDVRLGICAPCPSN--S-LVALVAIAENG-KESVILVD-------
   WD13  577-615    -HR------------V-ARAFE-T-VGNKVNAMTFSSDG--K-WLL----VADN-DSYIRVFD-------
   WD14  616-657    VAT------------SQLIDVL-L-FSKPCISMSYNETG--Q-YLA----TVHEGERAVYTWA-------
   WD15  684-742    TEEGGTCDIDDDEDDL-TTLMD-Q-DIKAMKELQIDENL--V-TFS----GLPS-SRWANLPDLALIKER

   WD40 Template    TGE------------C-LRTLS-G-HTSGVTSVSFSPDG--K-RLV----SGSE-DGTIKVWD-------