Input parameters:

  Query = Y48B6A.1 (Len=674)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y48B6A.1, Len=674):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASTSAATPLKNKRKFENGKKKPKTLKDEFGEKLDIKPVIVPPKPADEYDYDSSDEEDLRNTIGNIPIKWYDDEDHIGYD 80  
WD40-rpts                                                                                      

Query       81 KFGEKIAKPAKKGEIETFLEKMEDPDYWRKVFDKQTGTDVKLTDEQIEKIHNIATGKYPTIGYNPYEPFLDIFSSQKEIH 160 
WD40-rpts                                                                                      

Query      161 PIDNRPEPKSRFIPSKDEMRMVSRMVHAIKMGWAKGPRAKKEEHKSYDLWASEDALDNVTKSQLSRMRVHMPAPKVALPT 240 
WD40-rpts                                                                                      

Query      241 HAESYNPPEEYIFDDEERKKWEEAEKEDRVLNFMPSKYDALRKVPQYDKFITERFERCLDLYLAPRQRKMRIHADPTDLL 320 
WD40-rpts                              (_________________WD 1________________)                 

Query      321 PDLPNPNDLRPFPTTLAFYMRGHTGQVRAITVEPERGELLASGGEDGTVRIWMIATGRCIKTFQMDGEVTSVSFSPVADR 400 
WD40-rpts                         (______________WD 2______________)   (_________________WD 3__

Query      401 TLLAVAYEGKYVAILNTGCGDRLHVQQTEALLAETPTDAQEDGAVVTWRKSKEKLMLKMPNEVRQVTWHSKGDYFASVAI 480 
WD40-rpts      _______________)(______________WD 4_____________)(__________________WD 5________

Query      481 DDIAKSVYVHQLSKAKSQCPFQKRKGHVQAVTFHPTQARLFVATKIHVREYDLARCVLVKKLITGCKHISTMATDANGEN 560 
WD40-rpts      __________)   (________________WD 6________________)(__________________WD 7_____

Query      561 LFLGGLDRRFCWMDLQMGNKPWKKLKHHTAAVRSVAYHKKYPLLATVSDDGTAMVYYARIYTDFVKDNELYPVKRLRAHE 640 
WD40-rpts      _____________)    (_________________WD 8________________)            (__________

Query      641 KTPNDLCMLHTTWHPTQPWLITAGADGTIALFTY 674 
WD40-rpts      _________WD 9___________________) 

9 WD40-repeats found in QUERY=Y48B6A.1 (Len=674):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   265-303      4.20  288.23  0.00810       12.5%     34.41
  WD 2:  Seg 11   340-373      7.52  425.17  0.00012       35.0%     44.99
  WD 3:  Seg 14   377-416      5.21  329.99  0.00222       35.0%     55.32
  WD 4:  Seg 18   417-449      2.78  229.45  0.04920       20.0%     18.18
  WD 5:  Seg 20   450-491      4.45  298.67  0.00586       15.0%     51.64
  WD 6:  Seg 24   495-532      4.73  309.98  0.00413       17.5%     52.74
  WD 7:  Seg 28   533-574      6.73  392.76  0.00032       17.5%     55.87
  WD 8:  Seg 32   579-617      7.72  433.43  9.0e-05       30.0%     47.59
  WD 9:  Seg 34   630-673      5.00  321.01  0.00293       20.0%     46.73

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  265-303    EKE---DRVLNFMPS-----KYDALRKVP--Q-YDKFITERFER---CLDLYL
   WD 2  340-373    ---------MRGHTG-----QVRAITVEP--ERGELLASGGEDG---TVRIWM
   WD 3  377-416    -GRC--IKTFQMD-G-----EVTSVSFSPVAD-RTLLAVAYEGK---YVAILN
   WD 4  417-449    TGCG--DRLHVQQTE------------AL--L-AETPTDAQEDG---AVVTWR
   WD 5  450-491    KSK---EKLMLKMPN-----EVRQVTWHS--K-GDYFASVAIDDIAKSVYVHQ
   WD 6  495-532    -AKS--QCPFQKRKG-----HVQAVTFHP--T-QARLFVAT-KI---HVREYD
   WD 7  533-574    LARCVLVKKLITGCK-----HISTMATDA--N-GENLFLGGLDR---RFCWMD
   WD 8  579-617    -NKP--WKKLKHHTA-----AVRSVAYHK--K-YPLLATVSDDG---TAMVYY
   WD 9  630-673    -LYP--VKRLRAHEKTPNDLCMLHTTWHP--T-QPWLITAGADG---TIALFT

   WD40 Template    TGEC--LRTLSGHTS-----GVTSVSFSP--D-GKRLVSGSEDG---TIKVWD