Input parameters:

  Query = Y54G9A.6 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y54G9A.6, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTYQAATIVAAPNEFRVPFPPFVQISKVQFQREAGSRLLAASGWDGTCRVYEVGKLGDISEKLVFTHGKPLLTCTFAGY 80  
WD40-rpts                 (__________________WD 1__________________)         (______________WD 

Query       81 NKVAFGGVDHNVKLADIETGNGTQLGSHALAVRCMEFNPMSSLIVSGGWDSSVKLWDARSYGNGAIESVNVSSSVYAMDV 160 
WD40-rpts      2______________)(__________________WD 3_________________)(__________________WD 4

Query      161 LKHTILVGTKDRKIFMYDSRKLREPLQVRDSPLKYQTRAVQFFPTGEAFVVSSIEGRVAVEYVDQSGEEMMKRKYAFKCH 240 
WD40-rpts      _________________)(___________________WD 5___________________)                  

Query      241 REKDTDGTELIHPVHTVAFHPKYGTFATGGADGIVNIWDPFNRKRIIQLHKFETSISSLSFNEDGSQLAIATSYQYEKEI 320 
WD40-rpts      (_________________WD 6________________)   (_________________WD 7________________

Query      321 DPSPLPNNSITIRHITDPESRPK 343 
WD40-rpts      )                      

7 WD40-repeats found in QUERY=Y54G9A.6 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-53       6.72  392.40  0.00032       20.0%     54.45
  WD 2:  Seg  5    63-96       5.70  350.14  0.00119       17.5%     43.49
  WD 3:  Seg  8    97-137      8.92  483.07  1.9e-05       30.0%     53.95
  WD 4:  Seg 12   138-178      5.66  348.61  0.00125       17.5%     29.96
  WD 5:  Seg 16   179-222      6.92  400.33  0.00025       25.0%     48.91
  WD 6:  Seg 21   241-279      7.57  427.16  0.00011       25.0%     35.27
  WD 7:  Seg 24   283-321      7.96  443.39  6.6e-05       22.5%     53.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-53     APN-EFRV--P----FPPFVQISKVQFQRE--AGSRLLAASGWDGTCRVYE
   WD 2   63-96     --------KLV----FTHGKPLLTCTFAGY--N--K-VAFGGVDHNVKLAD
   WD 3   97-137    IETGNGTQ--L----GSHALAVRCMEFNPM--S--SLIVSGGWDSSVKLWD
   WD 4  138-178    -AR-SYGN--G----AIESVNVSSSVYAMDVLK--HTILVGTKDRKIFMYD
   WD 5  179-222    SRK-LREP--LQVRDSPLKYQTRAVQFFPT--G--EAFVVSSIEGRVAVEY
   WD 6  241-279    -RE-KDTD--G----TELIHPVHTVAFHPK--Y--GTFATGGADGIVNIWD
   WD 7  283-321    -RK-RIIQ--L----HKFETSISSLSFNED--G--SQLAIATSYQYEKEID

   WD40 Template    TGE-CLRT--L----SGHTSGVTSVSFSPD--G--KRLVSGSEDGTIKVWD