Input parameters:

  Query = Y71F9AL.17 (Len=1232)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y71F9AL.17, Len=1232):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLLIKFESKSARVKGISFHPTRPWVLTSLHSGVIQLWDYRMCVLLEKFDEHDGPVRGICFHHDQPIFVSGGDDYKIKVW 80  
WD40-rpts      (_________________WD 1________________)   (_________________WD 2________________

Query       81 NYKQKRCIFTLLGHLDYIRTTFFHHKYPWIISASDDQTVRIWNWQSRNSIAILTGHNHYVMCAQFHPTEDLVASASLDQT 160 
WD40-rpts      )   (_________________WD 3________________)   (_________________WD 4____________

Query      161 VRVWDISGLRKKQMPGGGAPSRPTGGQQAELFGQPDAVVKHVLEGHDRGVNWVAFHHTNPILVSGSDDRQVKIWRYNETK 240 
WD40-rpts      ____)                          (___________________WD 5___________________)(____

Query      241 AWELDSCRGHYNNVSSVIFHPNADLILSNSEDKSIRVWDMQKRTSLHVFRHENERFWVLAAHPSLNMFAAGHDNGMVVFK 320 
WD40-rpts      _______________WD 6___________________)   (________________WD 7________________)

Query      321 IQRERPAYCVSDNLVFYVKGQQIRKLDLTTNKDVALCKLRYPQPFMQPYYSLSFNPAEGTFLLTSRTHNKDLCAFELYKV 400 
WD40-rpts                                   (____________________WD 8___________________)      

Query      401 ASNSDGTTEAACVKSTGINALWVARNRFAVLDKAQNVSLRDLTNKELRKLENINTAVDDIFYAGTGMLLLRNDDGLQLFD 480 
WD40-rpts                                                                                      

Query      481 VQQKIVTASVKVSKVRYVIWSKSMEFAALLSKHTLTLVNRKLEILCTQQESTRVKSGAWDDDSVFLYTTSNHIKYAINSG 560 
WD40-rpts      (_________________WD 9_________________)                                        

Query      561 DCGIVRTLDLPLYILAIRGNVLYCLNRDATPVEVPIDNSDYKFKLALINKRIDEVVNMVRSANLVGQSIIGYLEKKGYPE 640 
WD40-rpts                                                                                      

Query      641 IALHFVKDEKTRFGLAIECGNLEIALEAAKKLDEPAVWEALGETALLQGNHQIVEMSYQRTKNFEKLSFLYFVTGNTDKL 720 
WD40-rpts                                                                                      

Query      721 VKMMKIAQARNDAHGHFQTALYTGDVEERVKVLRNCGQTSLAYLAAATHGYSAEAEELKAELESRQQPIPPVDPNARLLV 800 
WD40-rpts                                                                                      

Query      801 PPPPVARLEENWPLLASARGTFDAQLLGLGGQSAPTNVGGVKPAAAAFAVMDDDDGDVGNEAWGDDEYLVGEDGELDVDE 880 
WD40-rpts                                                                                      

Query      881 GEGPVDGDEEGGWDVDDDLALPDVTDDQGGDDDEEVVPNPAPAVSSEWPNVSRLAADHVAAGSFGTAIKLLHDTIGVVEA 960 
WD40-rpts                                                                                      

Query      961 APFKDVFVKAYAASRLSHRGWGGLGPAGPVSIHPVRNFQEDKNHLPVAAFKLSQLAKKLQKAYQMTTNGKFGDAVEKLRE 1040
WD40-rpts                                                                                      

Query     1041 ILLSVPLIVVSSKQEVAEAEQLITITREYLAALLLETYRKDLPKTNLEDAKRNAELAAYFTHFELQPMHRILTLRSAINT 1120
WD40-rpts                                                                                      

Query     1121 FFKMKQMKTCASLCKRLLELAPKPEVAAQIRKVLTAAEKDNTDAHQLTYDEHNPFVVCSRQFVPLYRGRPLCKCPYCGAS 1200
WD40-rpts                                                                                      

Query     1201 YSEGLEGEVCNVCQVAEVGKNVLGLRISTLKS 1232
WD40-rpts                                      

9 WD40-repeats found in QUERY=Y71F9AL.17 (Len=1232):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       5.33  334.80  0.00191       22.5%     54.13
  WD 2:  Seg  5    43-81       7.33  417.61  0.00015       32.5%     57.62
  WD 3:  Seg  9    85-123      8.18  452.44  5.0e-05       27.5%     56.64
  WD 4:  Seg 13   127-165      8.42  462.61  3.6e-05       32.5%     55.47
  WD 5:  Seg 18   192-235      8.49  465.35  3.3e-05       40.0%     55.52
  WD 6:  Seg 22   236-279      8.55  467.89  3.1e-05       42.5%     49.12
  WD 7:  Seg 26   283-320      3.07  241.62  0.03398       12.5%     56.33
  WD 8:  Seg 33   350-394      3.88  275.11  0.01215       20.0%     36.57
  WD 9:  Seg 45   481-520      3.33  252.40  0.02443       20.0%     43.09

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -MS----L-----LIKFESKSARVKGISFHPTRPWVLTSLHSGVIQLWD
   WD 2   43-81     -CV----L-----LEKFDEHDGPVRGICFHHDQPIFVSGGDDYKIKVWN
   WD 3   85-123    -KR----C-----IFTLLGHLDYIRTTFFHHKYPWIISASDDQTVRIWN
   WD 4  127-165    -RN----S-----IAILTGHNHYVMCAQFHPTEDLVASASLDQTVRVWD
   WD 5  192-235    FGQPDAVV-----KHVLEGHDRGVNWVAFHHTNPILVSGSDDRQVKIWR
   WD 6  236-279    YNE----T-KAWELDSCRGHYNNVSSVIFHPNADLILSNSEDKSIRVWD
   WD 7  283-320    -RT----S-----LHVFRHENERFWVLAAHPSLNMFAAGH-DNGMVVFK
   WD 8  350-394    TNK----DVALCKLRYPQPFMQPYYSLSFNPAEGTFLLTSRTHNKDLCA
   WD 9  481-520    VQQ----K-----IVTASVKVSKVRYVIWSKSMEFAALLSKHTLTLVNR

   WD40 Template    TGE----C-----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD