Input parameters:

  Query = Y73E7A.9 (Len=558)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Y73E7A.9, Len=558):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MISALERRYENLRFGPLFPDILNEDRLVDSLESFHMLEGHSGCVNTLRWNKTGALLASGSDDRNVKIWKSGREIHNLVTG 80  
WD40-rpts                                    (_________________WD 1________________)  (________

Query       81 HEGNVFAVEFLQNSGDQKLVTGAADRVVALHDIEASTCKKWELDGRVKRICTVEHDPTLFWAAVECDNGVQQFDTRTENP 160 
WD40-rpts      __________WD 2_________________)(__________________WD 3__________________)(_____

Query      161 EVIIRHTADREFHDAKSVAVSEARPNLIVVGFDETAVRLYDRRNLNAPMLTFSPLGANTYAYHATHVAFNKRGTEVVVNH 240 
WD40-rpts      ________________WD 4____________________)           (________________WD 5_______

Query      241 GGGGGVYVFSVDAELDPKYMDRFHSVMELPREPVITSGALPYPDLREIGSTAIREKHFAKAIDFYSDLIYRNDDRESHQD 320 
WD40-rpts      _________)(__________________WD 6__________________)(_________________WD 7______

Query      321 HRAFLSVCHSNRATALLLRRQRGDTYACVRDCIKALEIHRGNSKALLRLIKSFTTMEHIGLARKCVQKFKEWYPNDTAIE 400 
WD40-rpts      __________)         (________________WD 8________________)   (_________________W

Query      401 KMEEDVEALTPNDRPELVAPEGVVDYQERYGGSTNHQTDIKEANFFGSRDQYIIAGSDCGHMYIWNRDTSKIQGIFEADD 480 
WD40-rpts      D 9________________)   (___________________WD10__________________)   (__________

Query      481 HILNICQPHPDQFMIATAGIDDDILLWQPILERPDAFLSRRVEDPYEFMEKRADGMGGRIHLHMLRDLARDNSQCVQS 558 
WD40-rpts      _______WD11________________)                                                  

11 WD40-repeats found in QUERY=Y73E7A.9 (Len=558):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    31-69       9.82  520.22  6.1e-06       32.5%     51.02
  WD 2:  Seg  6    72-112      7.42  421.11  0.00013       27.5%     48.47
  WD 3:  Seg 10   113-154      5.62  346.68  0.00132       15.0%     52.76
  WD 4:  Seg 14   155-201      6.35  377.07  0.00052       20.0%     51.14
  WD 5:  Seg 19   213-250      6.30  375.04  0.00055       17.5%     36.61
  WD 6:  Seg 22   251-292      4.33  293.51  0.00688       15.0%     22.99
  WD 7:  Seg 24   293-331      3.46  257.63  0.02081        5.0%     15.69
  WD 8:  Seg 27   341-378      4.05  282.02  0.00981        2.5%     17.16
  WD 9:  Seg 30   382-420      5.69  349.74  0.00120        5.0%     29.38
  WD10:  Seg 34   424-466      7.08  407.22  0.00020       20.0%     47.86
  WD11:  Seg 38   470-508      8.03  446.46  6.0e-05       12.5%     52.12

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-69     -LE------SFHMLEGHSGCVNTL----RWNKTG--AL-LASGS----DDRNVKIWK
   WD 2   72-112    -RE------IHNLVTGHEGNVFAV----EFLQNSGDQK-LVTGA----ADRVVALHD
   WD 3  113-154    IEA---STCKKWELDGRVKRICTV----EHDPTL---F-WAAVE----CDNGVQQFD
   WD 4  155-201    TRTENPEVIIRHTADREFHDAKSV----AVSEAR--PNLIVVGF----DETAVRLYD
   WD 5  213-250    ---------SPLGANTYAYHATHV----AFNKRG--TEVVVNHG----GGGGVYVFS
   WD 6  251-292    VDA--------ELDPKYMDRFHSV----MELPRE--PV-ITSGALPYPDLREIGSTA
   WD 7  293-331    IRE-------KHFAKAIDFYSDLI----YRNDDR--ES-HQDHR----AFLSVCHSN
   WD 8  341-378    --Q------RGDTYACVRDCIKAL----EIHRGN--SK-ALLRL----IKSFTTMEH
   WD 9  382-420    -AR------KCVQKFKEWYPNDTA----IEKMEE--DV-EALTP----NDRPELVAP
   WD10  424-466    -VD------YQERYGGSTNHQTDIKEANFFGSRD--QY-IIAGS----DCGHMYIWN
   WD11  470-508    -SK------IQGIFEADDHILNIC----QPHPDQ--FM-IATAG----IDDDILLWQ

   WD40 Template    TGE------CLRTLSGHTSGVTSV----SFSPDG--KR-LVSGS----EDGTIKVWD